AMCG00014649 (LOC105024749,LOC106586266,LOC106582445)


Basic Information

Item Value
gene id AMCG00014649
gene name LOC105024749,LOC106586266,LOC106582445
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 25373386 ~ 25374072 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014649
ATGCTGAGAGACCCCGTGTCACGGTACATCAGCGAGTGGAAGCATGTCCAGAGAGGTGCGACCTGGAAGACCTCCTTGCACATGTGTGACGGCCGCTCCCCCACCCAGGACGAGCTCCCCACCTGCTACGTAGGGGACGACTGGTCTGGGGTGACCTTGCTGGAGTTCATGGACTGCACCTACAACCTGGCCAACAACCGACAAGTGCGCATGCTGGCGGACCTCAGCCTGGTGGGCTGCTACAACCTGTCGTCCATGAACGAGAGCGAGCGCAACGACATCCTCCTGCACAGCGCCATGAACAACCTCAAGCACATGGCCTTCTATGGGCTGACGGAGTACCAGCGCAAGACGCAGTACCTCTTCGAGAGGACATTCAACCTGAAGTTCATCTCGCCCTTCACCCAGATCAACAGCACCCGCGCCGCCAACGTGGACATCGACGAGGTAACGCGGCAACGCATCGAGGAGCTGAACTTCCTGGACGTGCAGCTGTACGAGTACGCCAAAGACCTCTTCCTGCAGCGCTTCCAGTTCACCCGCCAGAGGGAGCACCAGGAGGAGAGGCAGAAACGGCGGGAGGAGAGACGGCTTCTCCGAGAACAGAAAGCCTACCTGTCCAAACAGCAGGACGACGAGGAGGAGGCCACCACAGAGGACTACACCAGTCAAGTGGCCAGATGGTGA

Function

NR:

description
PREDICTED: heparan-sulfate 6-O-sulfotransferase 3

GO: NA

KEGG:

id description
K08103 HS6ST3; heparan sulfate 6-O-sulfotransferase HS6ST3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014649 True 687 mRNA 0.60 1 25373386 25374072

Neighbor

gene id symbol gene type direction distance location
AMCG00014648 hs6st3,LOC105898056,LOC102202054,LOC101476457,LOC100690379 coding upstream 127425 25245413 ~ 25245961 (+)
AMCG00014644 dnajc3 coding upstream 209751 25149803 ~ 25163635 (+)
AMCG00014646 NA coding upstream 247341 25124094 ~ 25126045 (+)
AMCG00014643 NA coding upstream 270748 25087014 ~ 25102638 (+)
AMCG00014637 NA coding upstream 435421 24928031 ~ 24937965 (+)
AMCG00014651 mbnl2,LOC107677847,LOC107653675,LOC107555253,LOC107559795 coding downstream 105719 25479791 ~ 25505003 (+)
AMCG00014653 rap2a,LOC101166017,LOC106512668,LOC105907999,LOC105933629,LOC100695037,LOC103391592,LOC106582448 coding downstream 148154 25522226 ~ 25530849 (+)
AMCG00014652 NA coding downstream 191085 25565157 ~ 25574008 (+)
AMCG00014654 kpnb3,ipo5,LOC107677849 coding downstream 201168 25575240 ~ 25592567 (+)
AMCG00014657 NA coding downstream 234916 25608988 ~ 25630854 (+)
G71670 NA non-coding upstream 264008 25109156 ~ 25109378 (+)
G71662 NA non-coding upstream 290508 25082659 ~ 25082878 (+)
G71598 NA non-coding upstream 840425 24523645 ~ 24532961 (+)
G71596 NA non-coding upstream 1040089 24332431 ~ 24333297 (+)
G71584 NA non-coding upstream 1464737 23908385 ~ 23908649 (+)
G71725 NA non-coding downstream 159270 25533342 ~ 25534154 (+)
G71763 NA non-coding downstream 331386 25705458 ~ 25762742 (+)
G71772 NA non-coding downstream 371731 25745803 ~ 25748408 (+)
G71784 NA non-coding downstream 396137 25770209 ~ 25770489 (+)
G71817 NA non-coding downstream 578161 25952233 ~ 25959702 (+)
G71525 NA other upstream 2517740 22855342 ~ 22855646 (+)
G71004 NA other upstream 7099026 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 7886336 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 8904177 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 9234354 16129479 ~ 16139032 (+)
AMCG00014687 NA other downstream 1530805 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 2461431 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 2494631 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 2928301 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 3422977 28797049 ~ 28837910 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000024_05073385_05109362 HS6ST3A coding CI01000024 null 5073385 ~ 5109362 (+)