AMCG00014654 (kpnb3,ipo5,LOC107677849)


Basic Information

Item Value
gene id AMCG00014654
gene name kpnb3,ipo5,LOC107677849
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 25575240 ~ 25592567 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014654
ATGCCGTCATCCAATCACACAGCGACTGTCTGCCAACGTTGTCCAATAGACAACCCGTTTCTCCTCGGCGGAAGGCCACCAATCCGCTGCCTTTGCCCTGCGACACTGTCCAATCAGAACACGGCGGTTCCCGAGTGGGGTCCAATCAGCGGGGCCCGGGCGGCGTGTCCGCTTTCGGTCTCTTTTTTGGATCTCACTGCAATGGCGGAGCAGCAGCAGTTCTACCTCTTATTGGGCAACCTGATGAGCCCTGACAACAATGTCAGGAAGCAGTCTGAGGAAACCTATGAAAACATTGTGGGTCAGACGAAGATTACCTTCCTTCTCCAGGCCATCAGGGATGCATCTGCTGCAGAGGAGGTCAGGCAAATGGCGGCCGTGCTACTGCGGCGGCTGCTGTCATCTTCCTTCGACGAGGTTTACCCATCCCTACCAGCGGACATGCAGACCGCCATCAAGACCGAGCTCCTAATGGGCATCCAGATGGAAGCTGCACCCAACATCCGCAAGAAGGTCTGCGACATCGCCGCGGAACTATCCCGAAATCTGATTGATGATGATGGAAACAACCAATGGCCTGAAGTTTTGAAGTTTCTCTTCGATTCGGTCAATTCTCAAAATGTTGGATTGCGTGAGTCTGCGCTGCATATTTTCTGGAATTTCCCTGGGATATTTGGTAATCAGCAGCAGCACTACCTGGAAGTGATCAAGCGTATGCTGGTTCAGTGCATGCAAGACCAGGAGAACCCTTCGATCCGTACCTTGGCTGCCAGGGCAGCGGCCTCCTTCGTGCTGTCCAACGAGAACAACACCGCCCTGTTAAAGCACTTTTCTGACCTACTTCCTGGGATCCTGCAGGCTGTGAACGAATCCTGCTATGAAGCTGATGACTCTGTGCTGAAGTCGCTGGTGGAGATCGCAGACACGGCACCCAAGTATTTGCGGCCTCACTTGGAGCCTACATTGCAGCTGAGTCTCAAGCTTTGTGCAGACACCAACCTGACTAACATGCAGCGGCAACTAGCCCTGGAAGTCATCGTCACGCTGTCCGAGACCGGTTCAGCCATGCTGAGGAAACACACCAACATTGTGTCACAGAGCATTCCCCAGATGCTGGCGATGATGGTGGATCTGGAGGAGGACGCAGAGTGGGCTATGGCGGACGAACTGGAGGATGATGACTTTGACAGCAATGCAGTGGCGGGGGAGAGTGCTCTGGACAGGATAGCCTGTGGTTTGGGGGGCAAGATTGTCCTTCCAATGATCAAACAACACATCATGCAGATGCTGCAGAATCCTGATTGGAAGTATCGCCACGCTGGACTGATGGCCCTTTCGGCTATTGGGGAAGGCTGCCACCAGCAGATGGAGGCGATCCTCAATGAAATTGTCAGCTTCGTCCTGCTCTTCTGCCAAGATCCTCACCCTAGAGTGCGGTACGCAGCTTGCAATGCCATTGGACAGATGGCCACAGACTTTGCTCCCACCTTCCAGAAAAAATTCCATGACAAGGTGATCTCTGCCCTGCTGCAGACCATGGAGGACCAGAGCAATCCCCGTGTCCAGGCCCATGCTGCAGCTGCCCTCATCAATTTCACAGAGGACTGCCCCAAGTCCCTGCTCATCCCCTACCTGGAAAACCTGGTCCAGCACCTGCATGTAATCATGGCAGCCAAACTCCAAGAGCTGATCCAGAAAGGCACCAAGCTGGTGCTGGAACAAGTGGTGACTTCCATCGCGTCGGTGGCCGACACAGCGGAGGAGAAGTTCGTGCCCTACTATGACCTCTTCATGCCTTCCCTGAAGCACATTGTGGAGAACGCTGTGCAGAAGGAGCTCCGACTCCTGCGCGGGAAGACCATCGAGTGCATCAGCCTCATCGGGCTCGCTTTCATGCCAGACGCCTCTGCTGTAATGCAGCTGCTCCTGAAGACCCAGACAGATTTCAACGACTTGGATGACGACGATCCCCAGATATCTTACATGATCTCAGCCTGGGCAAGAATGTGCAAGATCCTGGGCAAGGAATTCCAGCAGTACCTCCCTGTTGTAATGGGGCCGCTCATGAAGACAGCCTCTATTAAACCAGAAGTGGCTCTTTTAGACACCCAGGATATGGAGAACATGTGTGAAGATGATGGCTGGGAGTTTGTCAACCTGGGAGACCAGCAGAGCTTTGGGATCAAGACGGCAGGACTGGAGGAGAAAGCCACGGCTTGCCAGATGTTGGTATGCTATGCCAAAGAACTGAAGGAAGGCTTTGTGGAATACACCGAGCAAGTTGTGAAGCTCATGTGTGCCCGGGTGCGAGGACCGGAGTACCTGACGCAGATGTGGCACTTCATGTGCGACGCCCTGATCAAGGCTATTGGCACGGAGCCGGACTCGGATGTTTTGTCTGAAATAATGCATTCGTTTGCAAAGtgtattgaATTGATGGGAGATGGCTGCCTAAACAATGAGCATTTTGAAGAGCTGGGTGGCATCCTGAAGGGTAAACTGGAGGAGCACTTTAAAAACCAAGAGTTAAGACAAGCTAAAAGGCAAGATGAAGATTATGATGAACAGGTGGAGGAATCCTTACAGGATGAGGATGAAAATGATGTTTACATATTGACAAAAGTCTCGGACATTTTGCACTCCGTCTTCAGCAGCTACAAGGAAAAGGTGCTGCCCTGGTTTGAGCAGCTGTTACAACTTATAGTCAACCTTATTTGCCCTCACAGACCCTGGCCAGACCGGCAATGGGGGCTGTGCATCTTTGATGATGTCATTGAGCACTGCAGCCCCTCTTCCTTTAAATATGCCGAGTACTTCCTGCGGCCCATGATGCAGTCACTGTGCGACACCAGCCCCGAGGTCAGGCAAGCGGCGGCCTATGGAATCGGGGTCATGGCACAGTTCGGGGGAGACAACTACAGGCCCTTTTGCACAGAGGCCATTCCTCTTCTGGTGGGAGTGATCCAGGCTGCGGAGTCGAAGGCCAAAGAGAACGTCAACGCCACTGAGAACTGCATCTCGGCGGTGGGGAAGGTGATGAAGTACCGGCCTGAGTGTGTCAATGTCAATGAGGTCCTCCCTCACTGGCTGTCCTGGCTGCCTTTGAATGAAGACAAGGAGGAGGCTGTTCACACCTTCAACTTCCTGTGTGACCTCCTCGAAAGTAACAACCCTATTGTACTTGGACCTGAAAATTCGAATCTTCCCAAGATATTCTTAATCATCGCTGACGGTGTCGTCAGTGAGTCGGTTAAGCATGAAGATGGATGTAGCAAACGGTTGGCAAATGTTATTCGTCAAGTTCAGgTCTCTGGAGGGCTGTGGACAGAATGCGTATCGACACTGAATGAAACGCAGCAGAAGGCAATACAAGACCTGCTGAACACTGCTTGAAaagccttaaaaaaatatatttaactttcaAATGTAGCTCCTGATAATTCTACCCCTTTTTGAGCAACTGAAGAAAACGAACTGTAGCATGTCTGGATGTCTCCCGCAGACCCCACACCGCGACCCCAGGTATCTCTGTGGCGCAGACCTGCGATTTGTGAATGAATGGAGATTTCCCATCAACTGAGGACCACCTGGACCGAAACCATCCTACAGTACTGACACTTAGAGTATTTTTCTATCAGAACGTCACCCTGATCTCGgctaaagggaaaacaaattggaaatccattttattgttaggaataatacatttctggTATTAAAATTTTCCAGATCAGTTACTCAGAAGTAGGTGTGCATTGTAATGATATAAGCATTTCTATCCATCTAATGTTAACTGTACTAATAGGAGTGCGTGAGTTTGATTTATGGTAGATCCAGCTTCCTTTACCCAACGTCACGGCGCACTGAGCTGGTTAAGATCTAGAAGGGAGTGACAGCCTCTTATGGTGATGTCACGGTTTGTTTTTCCTATCCCAGCATCTAGTGCTCACTGAATGATGCCATAGTGTGGAAAGCTGAATGCAAGCGTTCGGAAAATGCTCTTATCATGTGCAAGTCTTTGGCATGTCTGGCAGTACCTCATTCACTCCTCCATGAAATAAACAgtgatggaaaacaaacaagatttttttggtattttggaGTTTATTTACGGTAGAGAAGTCGGTGCCAAGGGTTGCTAAATAGTTATGTATGTTTGAAGGTCCAAGGAAATGGCACTGAGTCcaactccccctccccccagccgGTGTCTGAATTTTTTC

Function

symbol description
kpnb3 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in protein import into nucleus. Predicted to act upstream of or within protein transport. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including digestive system; immature eye; nervous system; neural tube; and ventral mesoderm. Orthologous to several human genes including IPO5 (importin 5).
ipo5 Enables RNA binding activity. Involved in ribosomal protein import into nucleus. Located in membrane.

NR:

description
importin-5 isoform X1

GO: NA

KEGG:

id description
K20222 IPO5, KPNB3, RANBP5; importin-5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014654 True 4223 mRNA 0.51 27 25575240 25592567

Neighbor

gene id symbol gene type direction distance location
AMCG00014652 NA coding upstream 1232 25565157 ~ 25574008 (+)
AMCG00014653 rap2a,LOC101166017,LOC106512668,LOC105907999,LOC105933629,LOC100695037,LOC103391592,LOC106582448 coding upstream 44391 25522226 ~ 25530849 (+)
AMCG00014651 mbnl2,LOC107677847,LOC107653675,LOC107555253,LOC107559795 coding upstream 70237 25479791 ~ 25505003 (+)
AMCG00014649 LOC105024749,LOC106586266,LOC106582445 coding upstream 201168 25373386 ~ 25374072 (+)
AMCG00014648 hs6st3,LOC105898056,LOC102202054,LOC101476457,LOC100690379 coding upstream 329279 25245413 ~ 25245961 (+)
AMCG00014657 NA coding downstream 16421 25608988 ~ 25630854 (+)
AMCG00014655 LOC107559785 coding downstream 67778 25660345 ~ 25698928 (+)
AMCG00014661 gpr18,LOC107740919,LOC107681324,LOC107600424,LOC107748622,LOC107668869 coding downstream 341914 25934481 ~ 25941543 (+)
AMCG00014660 tm9sf2,LOC106574826,LOC107705039,LOC107719731,LOC107654273,LOC107556717 coding downstream 443866 26036433 ~ 26052543 (+)
AMCG00014665 NA coding downstream 493292 26085859 ~ 26123768 (+)
G71725 NA non-coding upstream 41086 25533342 ~ 25534154 (+)
G71670 NA non-coding upstream 465862 25109156 ~ 25109378 (+)
G71662 NA non-coding upstream 492362 25082659 ~ 25082878 (+)
G71598 NA non-coding upstream 1042279 24523645 ~ 24532961 (+)
G71596 NA non-coding upstream 1241943 24332431 ~ 24333297 (+)
G71763 NA non-coding downstream 112891 25705458 ~ 25762742 (+)
G71772 NA non-coding downstream 153236 25745803 ~ 25748408 (+)
G71784 NA non-coding downstream 177642 25770209 ~ 25770489 (+)
G71817 NA non-coding downstream 359666 25952233 ~ 25959702 (+)
G71826 NA non-coding downstream 418232 26010799 ~ 26011000 (+)
G71525 NA other upstream 2719594 22855342 ~ 22855646 (+)
G71004 NA other upstream 7300880 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 8088190 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 9106031 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 9436208 16129479 ~ 16139032 (+)
AMCG00014687 NA other downstream 1312310 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 2242936 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 2276136 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 2709806 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 3204482 28797049 ~ 28837910 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000299_00345042_00361660 KPNB3, IPO5.L, IPO5.S, IPO5 coding CI01000299 null 345042 ~ 362086 (+)