AMCG00014796


Basic Information

Item Value
gene id AMCG00014796
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31469559 ~ 31471622 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014796
ATGTGGAAATCTAACAGAAGCACAGTGAGTGGGTACTTCCTGGCTGGACGCTCAATGACTTGGGCTGTGATTGGGGCATCATTGTTTGTCAGTAACATTGGCAGCGAACATTTCATTGGACTTGCTGGATCTGGAGCCGCAAGTGGATTTGCTGTAGGAGCCTGGGAGTTTAATGCGCTTTTGCTCCTGCAGTTTTTAGGGTGGGTCTTCATCCCCGTCTACATCCTCTCAGGGGTCTACACTATGCCGGAGTACCTTTGCAAGCGCTACGGAGGCAAGCGGATTAAGGTTTATTTCGCCTCGCTCTCTTTGTTACTCTACATTTTCACTAAACTGTCCGTCGACCTGTACGCTGGGGCACTGTTTATTCAGGAGTCTTTGGGATGGAACCTTTACTTGTCTGTGATTTTGCTGATTTGCATGACCGCCTTGCTGACGATCACCGGGGGACTTGTTGCCGTGATTTACACCGATACACTCCAAGCTTTCCTGATGATTTCTGGTGCCTTCATACTTATGGTGATCAGCCTGGTTGAAGTGGGAGGCTTGGAGGGTGTTCGGGAGAAGTACATGCAGGCCACCCCCAATGTTACAgaaattcaaatacaatataaccTGACCTATACCAACAGCTGTCGTATCCACCCAAAGCCCCATTCCCTTAAACTTCTGCGAGATCCCATGGATGAAGACATCCCCTGGCCTGGCTTTCTTCTGGGTCAAACTCCAGCATCCATTTGGTACTGGTGTGCAGACCAAGTTATCGTCCAGAGAGTGCTGGCTGCTAAGAACATCATGCATGCCAAAGGAGCGACGTTAATGGCTGGCTTCCTCAAAATTCTTCCCATGTTCATCATCGTGATTCCAGGAATGATTTCGCGAATCCTCTATGCAGACGAGCTGGTCTGTATCAGTCCAGAGCACTGCCTGCAGGTGTGCGGTAGTAAAGCAGGCTGCTCCAATATTGCCTATCCTCGCCTGGTGATGAACATCCTTCCGGTTGGCCTGCGAGGGCTGATGATGGCAGTTATGATTGCTGCTCTCATGAGTGACCTGGACTCCATCTTCAACAGTGCCAGCACCATTTTCACTCTGGACATTTACAAGATGATCAGGAAGTATGCTTCTTCCAAGGAGCTGATGATTGTTGGGAGGCTCTTTGTGTTGTTCATGGTGGCTATCAGCATCGCCTGGGTTCCTGTCATCATTGAGATGCAAGGTGGCCAGATGTACCTGTACATTCAGGAGGTCGCAGACTACCTAACCCCACCTGTCGCTGCTGTCTTCCTGCTGGGGATCTTCTGGAAGCGTTGCAATGAGACTGGTGCATTCTATGGAGCCATGGTGGGCTTTGTGTTGGGTGCCACCCGCCTGATCCTGGCCTTTGTCTACCGTGAACCCCCCTGCAACCAGCCGGACAACAGACCCTCCTTCATCAAGGACATCCACTACATGTATGTAGCGGCAGGGTTGTTCTGGATCACTGGAACACTGGCAGTGGTGATCAGTCTTTGTACTCCGCCTCCTTCAAAGGAGCAGATCCGCAATACCACCATCTGGGGTATCCATCACAAGGAGCTGCAGGAGGCTCATCTCAAGGAAGAGGCCTACAAGCTGACCAGCAAAACCCTCATCGACTGCAATGGCAGCTGTGACCACAAGGAGTTACCCCCAGACCTACTGAAAGAGAAGCTTGGCGACAGGGTTGACGTCAAATTACTGGTTGGATCGGACTCTTCCACCTCTGACTGCACGATGTTGGGTCCTTCAGAAGCTCAGACGCCAATTGAACATTACAGCAATGGCCAGGCCACCTTGGTGGGTGAGCACAGCcctgatgatgatgacgataaACATCACAGCAAGGTCAGGAAGACAATAGACTGGTTCTGTGGTTTCAAGGGTCAGTCTGCTCAGAGACCAGAAACCAGAAATGCAGAGGAGTCTGAGGCACTGATCCTGGCAATGCTTTATGAGACTccaaaaattaaaatcttactGAACACAGGTCTGGTTGTAGTGTGCTCTGTGGGAATCTTTATGTTCGTTTATTTCTCTTTGTAG

Function

GO: NA

KEGG:

id description
K14383 SLC5A3, SMIT; solute carrier family 5 (sodium/myo-inositol cotransporter), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014796 True 2064 mRNA 0.50 1 31469559 31471622

Neighbor

gene id symbol gene type direction distance location
AMCG00014789 NA coding downstream 124129 31337113 ~ 31345430 (-)
AMCG00014790 casq1,LOC107742653,LOC107739823,LOC106575318,LOC107552369 coding downstream 176824 31279314 ~ 31292735 (-)
AMCG00014791 LOC106574540 coding downstream 190429 31261716 ~ 31279130 (-)
AMCG00014785 NA coding downstream 489682 30952471 ~ 30979877 (-)
AMCG00014782 NA coding downstream 544352 30922355 ~ 30925207 (-)
AMCG00014794 NA coding upstream 57375 31528997 ~ 31578588 (-)
AMCG00014795 LOC107746280 coding upstream 122769 31594391 ~ 31620377 (-)
AMCG00014797 NA coding upstream 229005 31700627 ~ 31707522 (-)
AMCG00014806 NA coding upstream 297951 31769573 ~ 31789737 (-)
AMCG00014809 NA coding upstream 495822 31967444 ~ 31969223 (-)
G72868 NA non-coding downstream 2503 31466492 ~ 31467056 (-)
G72862 NA non-coding downstream 5776 31462179 ~ 31463783 (-)
G72791 NA non-coding downstream 518184 30950110 ~ 30951375 (-)
G72790 NA non-coding downstream 522216 30946090 ~ 30947343 (-)
G72693 NA non-coding downstream 1074221 30395139 ~ 30395338 (-)
G72867 NA non-coding upstream 9226 31480848 ~ 31485466 (-)
G72874 NA non-coding upstream 43808 31515430 ~ 31519932 (-)
G72919 NA non-coding upstream 226033 31697655 ~ 31698012 (-)
G73005 NA non-coding upstream 425318 31896940 ~ 31898945 (-)
G73046 NA non-coding upstream 784533 32256155 ~ 32256775 (-)
AMCG00014775 NA other downstream 622759 30841523 ~ 30846800 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other downstream 2071254 29389290 ~ 29398305 (-)
G72236 rpl8,LOC107595836,LOC107748161 other downstream 3137077 28329739 ~ 28332482 (-)
AMCG00014692 LOC107756725 other downstream 4100032 27335695 ~ 27369527 (-)
AMCG00014693 NA other downstream 4164962 27285420 ~ 27304597 (-)
G73047 NA other upstream 791545 32263167 ~ 32263427 (-)
AMCG00014816 NA other upstream 983684 32455306 ~ 32555945 (-)
G73127 NA other upstream 1125840 32597462 ~ 32619149 (-)
AMCG00014824 NA other upstream 1323383 32795005 ~ 32806295 (-)
AMCG00014825 NA other upstream 1598627 33070249 ~ 33119328 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000045 slc5a3a coding NC_007112.7 CM002885.2 2025085 ~ 2027100 (+)