AMCG00014853 (cyh2,cyth4,LOC107558519,LOC107555099)


Basic Information

Item Value
gene id AMCG00014853
gene name cyh2,cyth4,LOC107558519,LOC107555099
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 37000630 ~ 37030062 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014853
CAGTTCCCCCAGACTTCACACCCTCCGAGAAATCGGAGCTCCAATCTATCAGAATGCACAAAAGTGAATTACTCGAGGATATCCAGAAGTTGAAGTTGGAGATCGCTAACGTCATTGCTGATATTGAAGACTttgagcaggaggaagagaaCAAAACTATTCAGAGGGGAAAACAGGTAACAAGTGGAAAGAAGAAGTTCAACATGGATCCGAAAAAGGGCATGCAGTATCTTATTGACAATAATCTACTTGTTTGGGAACCACATGCAGTGGCTGACTTCCTGTACAGAGAGGAAGGGCTGAACAAGACGGCCATAGGGGACTTCCTGGGGGAGAGAGAAGAGATGCAcctcaacattttaaaagcctttgTGGATCTTCATGAGTTTGCAGACCTGAATCTTGTCCAAGCACTTAGGCAGTTTCTCTGGAGTTTCCGGCTACCTGGAGAAGCCCAGAAGATTGACCGGATGATGGAAGCCTTTGCCACGCGCTACTGCGACTGCAACCCCAGCGTCTTCCAGTCCACCGACACTTGCTACATCCTGTCCTTCGCCATCATCATGCTCAACACCAGTTTACACAACCACAACGTCAAAGACAAGACCACCTTGGAGAGATTCATCAGCATGAACAGGGGCATCAACAATGGGGGAGACCTTCCCAGTGACTTACTCATGGATAAGGAGCCCAGAGGGATCATTCCCCTTGAAAACCTGTGTGTTAGAGAGGTTGTGGACCCTCGCAAGCCAtaCTGCCTGGAGCTCTACAACCCCAACAGCAAGGGTCAGAAGATCAAGGCTTGCAAGACAGAGACGGATGGCCGTGTGGTTGTGGGGAAACACCAGTCTTACAAAATCTCCGCCTCCACCGCTGACGAGAGGGATGATTGGATCAAATCTATCCGGGCCAGCATCACCAAGGATCCTTTCTATGACCTCGTCTCAGTTCGGAAGAAGAAAGTCATCAACCAGGTCCCTGACACTGAAGCAGTAGAACAGAAGAGCATCTGAAATGCCCCGGTAGAGGGTGGCTCCAGTCCTCCACAATCTCTCGCTGGTTTTGGTCTCAACATCTTATTGCTCTGAGGATCACATCTAGCCACTGCTAACTTCAGACTCCCAGGGAATCTGCATGAAAAGCCTtggctgggggggtggggggcagccTGTTCCTGACCCCCACCACTTTTACTATAAGGAAGCAACCAGTTTTCAATCTTGCTCTTCATCTCAGCCGGTGTCCTTTGGTCCTTGTTGACCCTGCAGTCATCCTTTGCATATGGTCGACCCTTCCCTTGGTTTGGAATCCTTAGGTCAATTCTCCCCCCTTAATCTCATTGGTTCTTCTATAATGTTTGGTTCTTCTTTTTGCCTGTTTGTCCGTCTTTGTAGCATTTACACTCTTGTGGTCAGAATTGCTTCTCTTCCTCCCCTGGGATCCTCTGTAAGGCAGCAGTGTTTTATTCACTGTATACCcaaaagagaaacagacagagagatagggAAAGAGGCAGAGCGataaagagagcgagagagaaacagaaacagaaaggcacagagagagagacagagatcagCCTAACTTCATACATTATTGAGTATTGAATCTATCTCTGTTTGATCACTGATTGAAAATACGTGCTGGTGGTGAAAAAACTGTCCCAAATTGGATTGGCAGAATTGGGCCCGGCAATGTTCTTAAGTATCAGCCGTTTCTGTTCCTTCTTCCCCTCAATATCCTGTTCAACTGCAAATGTGAGATACACACTGCCACATAGATACCTTGTTGTGTTCAGGAGATCTGATCTTTAAAAGTGCATTCCAGAGACTGTGACTCAGCTCAGGATAACCATCAATCACCTTCTGCTCCTTGTGCATCACCATGCATTTCAGTATGACCACCCTGATACATATTTCCTATGATATACCACCCCAACCAGTGGGTGGCCGTTGATAACACTTGCTTGTAGTCCCTAGCTAGCCTTGGGCCATTATTCGGCTTACCAAGTAAAACACATAACACAAAGGTAGAATTTGAAGGTGGTCTTGTAGTCATGATGGAAGCAACAGGTtcaatacacatatttatagtCAGGGTATAGTCTAGGGATTGATAGCTTATTTGGGGGCCTCTAAATAAAGCATGATCACAGCCTGATAAACGCAAGATCCACTCAAGATTACacactatataaatatgtagatGAGCTGcattagtaaaatatatattgaaaatgcatttttattaatttgactttGAATGAATTTGACAAAACAGCAGTATGTTACCAAAGacgagaaaacaacaacaccgtACACATTGAAGTTTCACTTGTTTCTCCTGGTGCTTAATTTTAGACACCAAAAACCTCTGCATTCATTCACTCATCTgagtatatacagtgcatccggaaagtattcacagcgcttcactttttccacattttgttatgtta

Function

symbol description
cyth4 Enables guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of ARF protein signal transduction and regulation of catalytic activity. Located in several cellular components, including centriolar satellite; cytosol; and intercellular bridge.

NR:

description
PREDICTED: cytohesin-4-like

GO:

id name namespace
GO:0043087 regulation of GTPase activity biological_process
GO:0032012 regulation of ARF protein signal transduction biological_process

KEGG:

id description
K18442 ARFGEF, BIG; brefeldin A-inhibited guanine nucleotide-exchange protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014853 True 2458 mRNA 0.45 11 37000630 37030062

Neighbor

gene id symbol gene type direction distance location
AMCG00014852 NA coding upstream 86127 36913400 ~ 36914503 (+)
AMCG00014850 NA coding upstream 267377 36617665 ~ 36733253 (+)
AMCG00014848 tmprss3,LOC107748899 coding upstream 702907 36295716 ~ 36297723 (+)
AMCG00014837 NA coding upstream 1448823 35551157 ~ 35551807 (+)
AMCG00014834 NA coding upstream 1526261 35464001 ~ 35474369 (+)
AMCG00014862 NA coding downstream 666598 37696660 ~ 37706352 (+)
AMCG00014864 NA coding downstream 723733 37753795 ~ 37754523 (+)
AMCG00014863 NA coding downstream 724797 37754859 ~ 37755848 (+)
AMCG00014870 NA coding downstream 871735 37901797 ~ 37904976 (+)
AMCG00014867 NA coding downstream 905529 37935591 ~ 37944752 (+)
G73748 NA non-coding upstream 58809 36838829 ~ 36941821 (+)
G73739 NA non-coding upstream 227889 36772485 ~ 36772741 (+)
G73689 NA non-coding upstream 311565 36654955 ~ 36689065 (+)
G73641 NA non-coding upstream 500500 36490183 ~ 36500130 (+)
G73638 NA non-coding upstream 522680 36476608 ~ 36477950 (+)
G73791 NA non-coding downstream 130926 37160988 ~ 37163326 (+)
G73802 NA non-coding downstream 142869 37172931 ~ 37173176 (+)
G73806 NA non-coding downstream 213173 37243235 ~ 37243446 (+)
G73828 NA non-coding downstream 267615 37297677 ~ 37298128 (+)
G73829 NA non-coding downstream 269323 37299385 ~ 37299598 (+)
AMCG00014836 NA other upstream 1588043 35390634 ~ 35412587 (+)
G73343 NA other upstream 2040183 34942011 ~ 34960447 (+)
G73329 NA other upstream 2220040 34780122 ~ 34780590 (+)
G73292 LOC100846954 other upstream 2761230 34238934 ~ 34239400 (+)
G73244 NA other upstream 3634530 33364755 ~ 33366100 (+)
G73850 NA other downstream 488046 37518108 ~ 37518406 (+)
G74114 NA other downstream 1402312 38432374 ~ 38432861 (+)
G74227 NA other downstream 1780631 38810693 ~ 38811128 (+)
G74348 NA other downstream 2306206 39336268 ~ 39475819 (+)
AMCG00014909 ankrd54 other downstream 2553976 39584038 ~ 39588507 (+)

Expression


Co-expression Network