G70063


Basic Information

Item Value
gene id G70063
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13694757 ~ 13696971 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU87527
AATGTTAAAACACTTGGAAAATGGTTTAATGATGTTTACAACAAAAGAGTACTGTAGTTACAGTAAAAgattatctttatatatataaaaaaaaaatacagcagacaAATGCATCTACACAAATCTACCATTTATCCTGATTCACATACTTAAATTTCTACACAATCTTTCAGATCTAAGCCACCATGTTGTAGCTGTTTTTAACTGGCAGCAAAAAGAAATGTATCCCCATTTGACATGTACTGGCTGAAAACCATAACATCCCAGCCATGTAGCTGCTTGTGTTTGAGGCAGCAATCCATGATTTGGATATGGCCTGGCTGTATTGATGTACATCAGGAACAAAATCTTAGACCAACTTCAAATTGAAatctacagtgtgtgtgtgtataggaaaaaatgtaatttgtcatATTAAGTTAAAATGGGGACACAATCCTTTAGCTGAAACTGCAGTCGGtgaaaatgcaattatacaGAATGATCATTCTGTGAAATCTACAACTgaattaatatgtacattttttattttttaaatcatgataaCCGGGCAGTGAAAACTGATATCACGAACATTGACACacccaaaacatacaaaaatactattttttaaaCTACCAAGAGTAAGAcagttcagtattttttttctccatgctATGACTGAAGAGAGCAATACACCAAAACGAACAAGAATTTTAAACGACACAAAACCTTTTAATTATCCCAGAAATATACCAAAATATACATCTAAGCTTTGGAATTACTGAGGTTAGACTAATGCAAGTGCTGGGTAACTGCATTTAATACACAAGCCTAAGGTTTTGCAAGAAGAAACAAATCTTTGGTATTTGCGTCAGGCGTACATTTAATATTTGGATTTTTGCTTTGGGATAGAGCTTGTAAGATCCTACAACCCCccactaaaaaaataaaataaaaaaaccaacaaaaaaaaaaaacaaatccttcatTTACCAATGCACAAGAACATTTAGACATATCTAGCATAAGGTTGAGGACTACAATGCATAGTTGCACAGTGGAACAGTGtagaaggaaaattaaattaaataaaaaagggaaacaaaaacagttaaatcccagaaaaaaaaaaagagctagcagttaaaaaaaaaaaacagcttctccTAAGCATTTGCAGTGCGCTCAGGAGAATACCTCAGTGTGTATTAATTCACATCACCCAGCCCACAAAAGGGTTAATAAAAGCACCCATCAGAGTAGCCAATTACATCCCTGTCTTCAGCCCCCCAACCAGTAGCTAAGCACCTGAGGGTCTGTTAGTCTAAGGAGTCTCTTCCTTGATAAATAGGCAGATTACAGACCAAGAGAGATGCCCAGAAACTCTGCCATGCCTCTACCCACCACGCCCCACACTACAGTCAATGATTCAAAAAAGCCTTTGACCAAACAATGTCTAAAGTACCAGAAGTCTGCATACGGTTTGAAATTTCATGGGTAAAAAATACTTGTATCAATTTTAAAGGTTATTATATAACTTAAGTTCTGGCCACACACAAGGAGAGACTAATAATGGATTTTATATACAACACGTTTGTGTTCATATTCTGCATGTTGTTGAAattaaatgacacaaaacatgTACCACCCCAGTTTGAAACTCATGTTTCTCTTTGTGAAATAAAGGCTGATGCAGGACTGAAGACTGTTTAGTTCATACAATCATTAAGAAGTCTTTGGTTTTCTCTGAAGAAGTTGTCTGGGACATATATGCTACAACCAGCAAGGCAGTACAATCACACCAACATCTACATTCAAAAAATCAAGAGGAAATGGAATAAGGATTgtcaaaaattaaaactgaagtaagttttggtgtttttttttttgtttttttttttaaagtaaagaaaGTGTCAATAGTATACATTTGGTCTTAAGTGGTTGCTTTATGGATAAATTGAATGCaagaaatatgcaaaatgaACGAAGTCCATCTTTTGGTCTAGAGATTATGTACTAGACACTTCAAAGTTTAGACGAGATGAGAATAAGCAAACAAGGTCTTCtaggtttaaaattaaataaaattgcaattttcccttttaaatacGACATTCatgagttttgtgttttaaccAACTGCACTGCCACGTGGTGCCTATACATCCCAGACGTACGAGTATACACTAAGCGGACATGAATAAGCCACTCTGAGgggttaatttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87527 True 2215 lncRNA 0.34 1 13694757 13696971

Neighbor

gene id symbol gene type direction distance location
AMCG00014430 NA coding downstream 158388 13531195 ~ 13536369 (-)
AMCG00014438 NA coding downstream 167155 13498726 ~ 13527602 (-)
AMCG00014432 NA coding downstream 207144 13478348 ~ 13487613 (-)
AMCG00014434 LOC106575972 coding downstream 221586 13443270 ~ 13473171 (-)
AMCG00014437 me3,LOC108426042,LOC107748144,LOC107595810,LOC107756775,LOC107695468 coding downstream 286181 13377662 ~ 13408576 (-)
AMCG00014429 NA coding upstream 364 13697335 ~ 13709287 (-)
AMCG00014428 NA coding upstream 31732 13728703 ~ 13742819 (-)
AMCG00014436 pcid2 coding upstream 87944 13784915 ~ 13790135 (-)
AMCG00014435 NA coding upstream 131484 13828455 ~ 13846485 (-)
AMCG00014431 adprhl1 coding upstream 156191 13853162 ~ 13864850 (-)
G70034 NA non-coding downstream 71376 13623115 ~ 13623381 (-)
G69973 NA non-coding downstream 318878 13304426 ~ 13375879 (-)
G69950 NA non-coding downstream 392378 13301924 ~ 13302379 (-)
G69896 NA non-coding downstream 608412 13085363 ~ 13086345 (-)
G69849 NA non-coding downstream 724202 12970253 ~ 12970555 (-)
G70091 NA non-coding upstream 62255 13759226 ~ 13761420 (-)
G70094 NA non-coding upstream 73206 13770177 ~ 13772272 (-)
G70169 NA non-coding upstream 222550 13919521 ~ 13921330 (-)
G70238 NA non-coding upstream 402393 14099364 ~ 14102156 (-)
G70315 NA non-coding upstream 1348881 15045852 ~ 15059774 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 561006 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 2027220 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 2557671 11125029 ~ 11137086 (-)
G69537 NA other downstream 2896610 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 3633527 10058097 ~ 10061230 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 3025102 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 3749897 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 3892296 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 4293680 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 5504832 19201803 ~ 19203567 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037996 NA non-coding NC_007120.7 CM002893.2 34350517 ~ 34355550 (-)
grasscarp (Ctenopharyngodon idella) G83706 NA non-coding CI01000013 null 8684886 ~ 8685095 (-)
grasscarp (Ctenopharyngodon idella) G204402 NA non-coding CI01000048 null 270974 ~ 271195 (+)
striped catfish (Pangasianodon hypophthalmus) cd247l NA misc NC_047599.1 CM018545.1 10508140 ~ 10570221 (+)