G72169


Basic Information

Item Value
gene id G72169
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28240566 ~ 28297484 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU90207
CCCCCGTACCCATCTGCTTAAGTAAAAGTGTTCTCATccctatctttttttttttttttttttTGCatttcaaactttttattttcgATAAAATCATACAATAAACGCACAGCTGAGTCTTCTCATGCAGTGCATAGCTTCTAAACTAGTACATAAAGCAAATACTAAATCTATGGAACTCAGGTGCTCAACTTCAAACATTTAGCAAGTTAGAAAGCTTTTTCCACCGAGCATCCCCTACCCCCCACTCCCATGAGCTCTGTCCTGCTGCTACCCTTGGTAAGACTTATTGCTGCATCTGAGACTTGCTAAATGTTCAAGAAAAACACCCGAGACTccaaatatgcaaatgcaacaATAGAGAATAACCACATGTTTTAAGATTGCCATGTGCCAGACgttcactgaaaacaaaaaaaaaaaaaaaaaaaaaaaaacgcaaacACACGATTGGAGAACCTGGACACTTTGAACTGATACATTTAGGAAATGTGTTTCTATTATTTTGATAACTTTTATCCAAACCTTggcatgtttttcaaattttgattgCCAATTTGTACTTCTATAGAAACGTTTGGCCATGAGGCCAGTAACAGGTGTGGATTTTGACCGAGTCCAATATGACTTTAACATTAAAAAGCTCACACTACCCCGAAATATATAAATTTCACGCATACGGGTGACATTCAACATTCAAGTGCCAGTGTTTTTGTACTGTCTTTTGGTCAAGTTTCTTGAAACTTTCAAAGAATCACTTTTAggcttataaaaataaatatttctcaaaaaatgcttaataaattacacaaaactaGCAGCAAAAAAGTAGAATCTAGAAATCTGTGTGCAAATAGCTAAATTCCCAACTGCTAATCCCCCTGGTCCCAAATAAATCCTGTTTAAGTATCAAGCCCCTTCCCCTTTGTAAACAAGCTGCGTTTCACAATCTCCACACAATATTTGGAAGCTTAAGGACACGCACACaagacatttatataaaactctagatgtgcaataaaataatttgtaaaactTGATGGGCACGACATACAAGGGCCTAAACCTAACTTAAATAGCACCATTCATCTTAAGTTACCTCAATACTGTCAGTGCATCCGCTTcaatcattataatttttttcaagGCACAACACACTTGAGAATAAATCTATTGCACTTAAGTTAAATGCCATTTCCTCAACTCCCCCCAAGCCTTCTTAAAAGAAAAGCTAATGCTGGCTCCCTGGCCAatgattttaaatacacatcaaGGCAGATTAACTCCAAAGGAGTTTACAGCATTAATGTACCATCAGGAGGGAAAAGAAACCCAGTCTTTGGCCAGATATAGTGGAATACACAGCCAGTTTTATGCAATGGAAACCTATGCAACTCAAACGGTGGTGCACCAAACTGCACTGAATGCCACTGGCAACACCTTGTGCAGTTCTTAGTACATTTCTGACCTCTGCAATCCCTAACACAGCTTTCGTTGTTAAAGGAGCAATGTCTATAGTAAGCCGAGGATGTCTTTCGGAATTTAACGCAGCTTGAAAAGAGAATGTAtatacttttgtaataaaataaagcctgCTGCAGAATTCGTTTGTTTTATCCCCTTGACCAAAAAACACCAACACTAGCATGCGTATAAGACCGAGTCAGCCTTGTCTTTCCTGCAGGGCTGCTTCGGTGTTGTGGTCCTTATATAGCCATTCAACTTCAGTTTCAATATGGCAGGCATTTGTCATTTTAAGATCAACCATATGTAAAgtttagaaacatttaattaaaaaactatcAAGTTTCTCAATTGCCCCTTAAAAatgtttcaagaaaaaaaaaaaaaaaaaaaaaaccaaaacaaaacaccgCCCCGCTTAATGGCTAGCTTGTGGTACTTAACTAGCTGCCTTAACACTGTCAAGTCAATTGCAATAAGTGGAGAAGTTCCAGCATGTGTTTTGTCTAAAAACCAGTGCATTAAACACCAAGTTTACTTTATATGAATCTTAAGATCACACCTGGAATGGCTTTTCGAAGACTACCATATCCCTAATAGGTACCTATCCAGGATAGAGTGAGCAAAAAATCAGAACtcttcaaatacattgtttgcCACACAAGGAATCACCTTTACTCAAACGCTTCTGTGATGGTTTAACAAGCAGTTTGTGCTCAAGCCTGTATACAAATACAGGCTACCAGATAACCTGATGTCCCTGTGACAATTTGAAGTTCAAATGGAACCATGACTCACTCAAGTCATATCCCAGTATTTGCCAAGGTTTGATTTAGTACAAGCTTTTTATGCCTTACAAAAACAATTGAGATCTTGGCTACATTCAGCCAgtatgacattaaaaaataaaaattcctGTCTAAAGTTAAAGGCACAgtacattaacaaacaaatgatCCTCAgtttacaaagaaataaatgaagtgcAGTTGAAAACTAGAGTCCAAGATTCTAGGCATTATGTCAGCAGCCATGTTTGTCTCCATCTAAGGTGTGATGCTCTGGGTCTCTTGCAGGCCATCTTCAATTTGCTTTAAGCTCCCTTTAAGAATGTTTTCAGAGAATCACAGCTGGTAATGTACTGCGAGTTCTTGAAGCTACACAAGGTATAGTCTGGCTAAGTTACATGTGGTTTCCATTCAGCTAGTTTGGCATGGTGACATCCACTGCGTTTGGGTCTTTAGTTTCCCCACCAGTCAACTTGGGAGTAATTTCCTCCATAACCATCACTGCTGTAGAAGTTTCCAAAgccacctgagagagagagagagagagagagagagagagagagagagaacaattaAAGTCTGTGGAGAGGGAAGTAAACAATGTGCGAGCAATGGATCTGAACATCACAAGGATTCAATTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90207 True 2894 lncRNA 0.38 2 28240566 28297484

Neighbor

gene id symbol gene type direction distance location
AMCG00014709 cask coding upstream 4651 28222661 ~ 28235915 (+)
AMCG00014711 NA coding upstream 56036 28167033 ~ 28184530 (+)
AMCG00014708 LOC106586788,LOC107081331 coding upstream 321643 27891851 ~ 27918923 (+)
AMCG00014706 NA coding upstream 379203 27843390 ~ 27861363 (+)
AMCG00014705 NA coding upstream 526298 27703084 ~ 27714268 (+)
AMCG00014714 rpl8,LOC107595836,LOC107748161 coding downstream 32313 28329797 ~ 28332468 (+)
AMCG00014721 med14,LOC106581951 coding downstream 109733 28407217 ~ 28441529 (+)
AMCG00014722 NA coding downstream 147492 28444976 ~ 28450107 (+)
AMCG00014720 NA coding downstream 158711 28456195 ~ 28483850 (+)
AMCG00014724 NA coding downstream 285985 28583469 ~ 28590960 (+)
G72072 NA non-coding upstream 761122 27475064 ~ 27479444 (+)
G71995 NA non-coding upstream 1213294 27026775 ~ 27027272 (+)
G71963 NA non-coding upstream 1287313 26952296 ~ 26953253 (+)
G71859 NA non-coding upstream 2009001 26231219 ~ 26231565 (+)
G71826 NA non-coding upstream 2229566 26010799 ~ 26011000 (+)
G72173 NA non-coding downstream 185 28297669 ~ 28300813 (+)
G72208 NA non-coding downstream 39807 28337291 ~ 28341717 (+)
G72273 NA non-coding downstream 229304 28526788 ~ 28578733 (+)
G72329 NA non-coding downstream 534272 28831756 ~ 28831975 (+)
G72341 NA non-coding downstream 621492 28918976 ~ 28921290 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other upstream 360766 27868703 ~ 27879800 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other upstream 398695 27835503 ~ 27841871 (+)
AMCG00014687 NA other upstream 1329329 26904877 ~ 26911237 (+)
G71525 NA other upstream 5384920 22855342 ~ 22855646 (+)
G71004 NA other upstream 9966206 18271854 ~ 18274360 (+)
G72175 LOC102776245 other downstream 4889 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 499565 28797049 ~ 28837910 (+)
AMCG00014739 NA other downstream 950391 29247875 ~ 29256354 (+)
AMCG00014738 NA other downstream 970845 29268329 ~ 29279149 (+)
AMCG00014757 LOC105927538,LOC107688735,LOC105016589,LOC104946938,LOC107716767,LOC107676512,LOC107099897,LOC103140352 other downstream 1545983 29843467 ~ 29846586 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G497350 NA non-coding CI01000340 null 19448439 ~ 19451285 (-)