AMCG00015501


Basic Information

Item Value
gene id AMCG00015501
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10378285 ~ 10385379 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015501
ATGCTGAGCGGAATTAAGCTGGAGGCGGGCGAGGAGTGGATGGCGTGCTACCAGGACGAGCTCTACCCTAATGTGAGTGGCCTGCCGCCCAGCCTGGGGCACAGTGGGTACCTGTCAAGCTCAATGCCAGCTGGGTCCATGGGCCTGCCCTATGTGCACAACAGCCATGGCGGTGCTGGGGTTGGAGGAGCGGCAATGGGCAGCGGTGGGCTGGGGGGAATGGGGGGCCTCCCCCAGCTGGGCCAGGGAACAATGGGGGTCATGCCGGGCCAGGCGGGTTATGGGGGCGGGGGAAAACGCTTCCGCTGTCGGAAGCCGGACCGGAAGGCTGGGAAGGATGAGAGCGATGCCACCCCTGCTGCCGctgcctcttcctcttcctcctcttcctcctcctcctctactGTGGCCACCGCTGCCCTCTCCCGCCAGTCCAGCCAGGAAGCCTCTCCGGACCGGTCCCCCCTACCCCTGAGGGACAAAGCCAAAGCCACCACGGCCCATGTTCGGCACTCCCCCCCTGTGGATCCCCCCCTGCACTTCCAGCCCCTCTCCCCgctcccccagcccccccacctGAGTCTGGACCCGGGCCTGCGGACCGAGCCTCTCCACCACCCGTTCTCCATCACTCACCTCATGGCTGCAGAGCTCCAGCACTGTAGTGCCCAGCGTGGTGAGGCGGGCCCCTACGAGGCTGGCACCTGCTACCCCGGGTACATCCCTGCCTCCTCATCCTCGGCACAACTGGCCAGCGTGTATTCTTACTCCTCTGGACGAGAGGTGGCACCCCTAGTGGGGGATGCCCCTTACTACTCCAGTATGTACTCAGTGCCCATTCTGAGCTCCTCCTGA
>TU122588
cctGAGTCTGGACCCGGGCCTGCGGACCGAGCCTCTCCACCACCCGTTCTCCATCACTCACCTCATGGCTGCAGAGCTCCAGCACTGTAGTGCCCAGCGTGGTGAGGCGGGCCCCTACGAGGCTGGCACCTGCTACCCCGGGTACATCCCTGCCTCCTCATCCTCGGCACAACTGGCCAGCGTGTATTCTTACTCCTCTGGACGAGAGGTGGCACCCCTAGTGGGGGATGCCCCTTACTACTCCAGTATGTACTCAGTGCCCATTCTGAGCTCCTCCTGATGTGCCACCATGCCAGGctgtgccccccccaccccacagcaACACTGGTTTGCCACCTGTACGGGAGAGGGGGGGTGCAGAATAGGAGAATGACGTGCTGGTCCATTTCCCCCTCATAATAGACTGTGTCGCACCGAGTGGGACTTCTGTCAGTTAACGTAGAACTTGATCTTCAAAAGccttttacttaaataaatgccaaaCGGATGGAGCTGGGAACTTCTAGCAAGGAGGAGAAGAGAGCTGGCTGCTTGGGGCTCTGCAAATTCTTCACGTTACAGTGTTACAAACTCTCGCCTTCAGCCCCCGAAAGTGGTCTGCTGCTGGAGATCCAAGGACGTGAATCCCATGTGTGGTTTCAACAGAACGATGAGCATAAACAAATTCAAGACAATAATTCAAGACCATTTTAtcatgtttacatattttaatttattttctgcaaatatttTTCAACACGGATGTCTTTAGGTTCAGCGGTGACGGGGGTGCGAAGAGACACTAAAGACTGGCCAAATGCCCAGAATCAACTAGCCGAATGCTGCTTTTTCCCCTTTACCAGTTGTTCAAGGGTGGTTTAAGCTCAAGTGACTgatcagttaaaaaataaatatgtatatataacttctgaatgtgatttttatatCCTGTTTCGATTTGCCttgtttttcatcttcaaaATATTGTCTTCCGGGAAACAGTTCTGAGGACAGAAGGAGTGTATTTCCATGCATCCATCTCAAACACTGCAATCACCGGGGTCTCTGCCCAGAGTTGGTCAGGAGACTCAGAGAGCTTCTGAGACCAGGACTTTTGAAATCCAAAGTGACTTAAATGACTGTAACTGGACTGTAAATGATCAACTATATGATTTGCCAATGACATCACTGTAACTGACCCCAGATCTAACACTCACTCATACTCCAACCAGAATCACAGGGGTATGTCCTTGCCATATCTCTAATTACTGATGTTACTGATGTGTTGGACTTTTGAGGCAGATATTTGTACACGTTTCCCAATTGTGATTTGGATTGCAGTGTTTAAAAGGGGCAGAATGGGATGTAAAAATCCCAATGGAGGATAGGAGgtatgttttgatattttaactTTTGCCATTGGGTAGCTATTCAATGTTTTTGAAGAAATGCTCTTGATCAACCTCTCTGTACTCACAGTATTCCTTTTTTCACAATGTGATGTCATGTTAGAAACCCAGAAATAAAACCCATTCCACTTATGTCAAACTACCACAGGAGTGCTTGTTGTTTTATAACTGTAGCAGATCCCCCCACCTACATTAAGTTTGAAGTGCAGTATTTTTGTGAGCTTGCTCatttaacataacatttctAATCAGAAGGGATCAACGAGTGAccaattcaaatcaaattaaaagggACAACcacaaaatatttgatatttgctaattcaatttacatttgcTTAGAAAAGGGAATCCTGACACAACACACAGAATATAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015501 False 855 mRNA 0.66 3 10379770 10385379
TU122588 True 1765 lncRNA 0.44 1 10378285 10380049

Neighbor

gene id symbol gene type direction distance location
AMCG00015500 zdhhc24 coding downstream 22320 10353209 ~ 10355965 (-)
AMCG00015499 NA coding downstream 44148 10298043 ~ 10334137 (-)
AMCG00015494 NA coding downstream 107973 10267939 ~ 10270312 (-)
AMCG00015496 NA coding downstream 119196 10253692 ~ 10259089 (-)
AMCG00015495 NA coding downstream 167003 10200780 ~ 10211282 (-)
AMCG00015507 kat5,LOC106603125,LOC106563454 coding upstream 9065 10394444 ~ 10404856 (-)
AMCG00015506 drap1 coding upstream 46419 10431798 ~ 10437010 (-)
AMCG00015508 NA coding upstream 64850 10450229 ~ 10460735 (-)
AMCG00015514 NA coding upstream 107761 10493140 ~ 10505219 (-)
AMCG00015515 bbs1,LOC107579588 coding upstream 144674 10530053 ~ 10538036 (-)
G98216 NA non-coding downstream 155760 10173101 ~ 10222525 (-)
G98211 NA non-coding downstream 212888 10107233 ~ 10165397 (-)
G98163 NA non-coding downstream 302392 10026114 ~ 10075893 (-)
G98126 NA non-coding downstream 360416 9929562 ~ 10017869 (-)
G98314 NA non-coding upstream 104200 10489579 ~ 10493106 (-)
G98399 NA non-coding upstream 323042 10708421 ~ 10708752 (-)
G98510 NA non-coding upstream 758139 11143518 ~ 11149864 (-)
G98591 NA non-coding upstream 1162256 11547635 ~ 11547875 (-)
G98648 NA non-coding upstream 2060619 12445998 ~ 12446953 (-)
G98269 taf6l other downstream 37417 10288026 ~ 10340868 (-)
AMCG00015493 zbtb3,LOC107602571 other downstream 179631 10195564 ~ 10198654 (-)
AMCG00015497 NA other downstream 184427 10188842 ~ 10193858 (-)
AMCG00015479 NA other downstream 352266 10018764 ~ 10026019 (-)
AMCG00015468 NA other downstream 391657 9973956 ~ 9986628 (-)
AMCG00015519 zmp:0000001168,sipa1,LOC108430456 other upstream 269806 10655185 ~ 10704395 (-)
AMCG00015524 NA other upstream 458306 10843685 ~ 10849421 (-)
AMCG00015532 NA other upstream 627271 11012650 ~ 11237850 (-)
G98502 NA other upstream 629246 11014625 ~ 11245562 (-)
AMCG00015535 NA other upstream 800481 11185860 ~ 11261168 (-)

Expression


Co-expression Network