AMCG00015507 (kat5,LOC106603125,LOC106563454)


Basic Information

Item Value
gene id AMCG00015507
gene name kat5,LOC106603125,LOC106563454
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10394444 ~ 10404856 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015507
ATGGCTGACACGGTGGAGATTATCGAGGGCTGCCGGCTCCCGGTCCTGCGGAAGAACCAGGAGAACGAGGATGAGTGGCcacTGGCCGAAATTCTCAGTGTGAAGGAGATCACAGGGAGAAAGCTTTATTATGTTCACTACATTGACTTTAACAAGCGCCTGGACGAATGGGTGACTCCCGACAGGCTGGACCTGAAGAAGCTCCAGTTCCCCAAAAAAGAGGCCAAGACGCCCACCAAGAACGGGCTCCCCGGCTCACGGCCCAGTTCCCCGGAGAGAGACGTGGTAAGAGCGGCCGGAGCCGGCTCCCGCCCCACCCCCAGGCCGCCTCAACCGGAGACCCCGGCTGAGCAGAGGGCCCTGACTGAGCGGGAGAAGGGCCAGAGCTCCCCTGACTTTCCGGTGCTGCAGCCTGCTCAGAGGAAGAGTCTAGACCTTAGCCTCCAAACTGCAACCGCTCCATCCAGAGGCAAAACCGTCCCCACGCCGAAGAGGAAGGCGGAGTCCGTTTCCCTGGCGACGCAGGTGTCCCCGGCGACCCCGGTGCCCTCTCTCCCCAGCTCTACAGAAGCGACGCAGGCCTCTGTTTACCCCGCAGCCACCTTTGGGCCCAAGTCCTCCGGCCGTGAGGACCACGAGCAGCTGGGGTCGCTCACCACGAATGGTACAGCCCGGCGTCTTATTCCTTCTCAGCctgggaggaagaggaaagCGAACTGCGTGGGCACGGATGAGGACTCCCAGGACAGTTCGGACGGGATCCCCTCGGCGCCTCGCATGACCGGCAGTCTGGTGTCGGACCGCAGCCACGATGACATCATCACACGCATGAAGAACATCGACTGCATCGAGCTGGGCCGCCACCGCCTCAAGCCCTGGTACTTCTCGCCCTACCCGCAGGAGCTCACCGCCCTGCCCATCCTCTACCTGTGCGAGTTCTGCCTCAAGTACCTCAAGAGCCTCAAGAAGGGCACCATCTCCTTTTTCGAGATAGACGGCCGGAAGAACAAGACGTACTCCCAGAACTTGTGCTTGCTGGCCAAGTGCTTCCTGGACCACAAGACCCTGTACTACGACACGGACCCCTTCCTCTTCTACGTCATGACCGAGTACGACACCAAGGGCTTCCACATCGTCGGCTACTTCTCTAAGGAAAAGGAGTCGACGGAAGATTACAACGTGGCCTGCATCCTCACCTTGCCGCCCTACCAGCGGAGGGGATACGGCAAACTGCTGATTGAATTCAGCTATGAGCTGTCCAAGGTGGAGGGCAAGACCGGCACCCCCGAGAAGCCCCTGTCTGACCTGGGGCTGCTGTCCTACCGTAGCTACTGGTCCCAGACCATCCTGGAGATCCTCATGGACCTGAAGTCAGACAATGGAGAGCGACCGCAGATCACAATCAATGAGATCAGCGAAATAACCAGCGTGAAGAAAGAGGATGTCATCTCCACTCTGCAGTACCTCAACTTGATCAACTACTACAAGGGCCAGTACATCCTCACGCTGTCCGAGGACATAGTGGAGGGGCATGAGAGGGCCATGCAGAAGCGCCACCTCCGCATTGACCCCAAATGCTTACACTTCACCCCCAAGGATTGGAGCAAGAGGGGAAAGTGGTGAATGACACTACCATCCTGGTCTTTTCCCCGGGCTGGCCGGACCCCGCTCGATACACTGGACTGCTGCTGGCAGCGCTGAGGACCCCGGGGGGCTGCGGACACCCGTCTATTGGGAAGTCAGGCGAGCACTGGCTGGTCTCGGACCTGGACTTCCTGATATACAAATGTTGTGGATGTTGAAGGAGCCCGATTGTCACTCCCCTCTCCCACCTGAATGAATGTGCGGTCAGTGTCTAGGTCTCTCTACCCCGtgtataaacaaatgtgttgttttttaaatctgggGAGGCACGTGTACAGACTTTGTAATCAAGATTGTGTAAACCGGTGTATTGTAATGTatcatgcatttgtgtgtgtgtgtgtatatatatatatagatatatagatatgtatatttatatgagGAAGATATCAGTGAAACTGCACTTGTCAGGACATAAGGGAAGTCCCCCCCCCATTCAATACAAGTGCATCAAGTCATTATATGGACTCTTTAATTTTGTCgacaatgaaaatgttaacGATTGTCTAGAAATGTTGCCACTTTAACCAACTCGTGTCCATGTCCACATTCCCCCCTCCGGCTTGTTCAGTATCGACTCTCTTCATTCCCACACCGGGTCGAGCCCAGCGCTGTCTGACTCTGTGCGGAGAGGTCttgttattgtaattgtgtCTCCAGTTCTGAACTGCAGGTCCGTCCTCTACTAAAGTGTATCATCCTTTCACGCACACTGCAAACCCCCTCGAGAGACCCCCGTCCACCACAGTGGCCCCCGGACCCCCGTGTCTGTCCCTCCTGTTTGTATGACAtggtgttgctgtgtgtgaGATTCAAATGCAGAGGGAACTAGGTCCTgttgactgaaaaaaaaaaaaaaaaaaaaagccatgtgGAACTGTTACAAGAATGTAAATTTTAGTGAtctgtacagttttgtttttgatataatGAAGCGTGAATTATTGGTTtataaaaatatcagaaataacttttttttaagaaaaagcaaaaacacctCAAAATATAGCATgccttttaataaaacatgac

Function

symbol description
kat5 Enables DNA-binding transcription factor binding activity; histone acetyltransferase activity; and transcription coactivator activity. Involved in several processes, including cellular protein metabolic process; negative regulation of macromolecule metabolic process; and positive regulation of cellular metabolic process. Located in nucleolus and nucleoplasm. Part of Piccolo NuA4 histone acetyltransferase complex and Swr1 complex. Biomarker of breast cancer.

NR:

description
PREDICTED: histone acetyltransferase KAT5 isoform X1

GO: NA

KEGG:

id description
K11304 TIP60, KAT5, ESA1; histone acetyltransferase HTATIP

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015507 True 2679 mRNA 0.53 14 10394444 10404856

Neighbor

gene id symbol gene type direction distance location
AMCG00015500 zdhhc24 coding downstream 38479 10353209 ~ 10355965 (-)
AMCG00015499 NA coding downstream 60307 10298043 ~ 10334137 (-)
AMCG00015494 NA coding downstream 124132 10267939 ~ 10270312 (-)
AMCG00015496 NA coding downstream 135355 10253692 ~ 10259089 (-)
AMCG00015495 NA coding downstream 183162 10200780 ~ 10211282 (-)
AMCG00015506 drap1 coding upstream 26942 10431798 ~ 10437010 (-)
AMCG00015508 NA coding upstream 45373 10450229 ~ 10460735 (-)
AMCG00015514 NA coding upstream 88284 10493140 ~ 10505219 (-)
AMCG00015515 bbs1,LOC107579588 coding upstream 125197 10530053 ~ 10538036 (-)
AMCG00015518 NA coding upstream 230059 10634915 ~ 10636279 (-)
G98216 NA non-coding downstream 171919 10173101 ~ 10222525 (-)
G98211 NA non-coding downstream 229047 10107233 ~ 10165397 (-)
G98163 NA non-coding downstream 318551 10026114 ~ 10075893 (-)
G98126 NA non-coding downstream 376575 9929562 ~ 10017869 (-)
G98314 NA non-coding upstream 84723 10489579 ~ 10493106 (-)
G98399 NA non-coding upstream 303565 10708421 ~ 10708752 (-)
G98510 NA non-coding upstream 738662 11143518 ~ 11149864 (-)
G98591 NA non-coding upstream 1142779 11547635 ~ 11547875 (-)
G98648 NA non-coding upstream 2041142 12445998 ~ 12446953 (-)
AMCG00015501 NA other downstream 9065 10378285 ~ 10385379 (-)
G98269 taf6l other downstream 53576 10288026 ~ 10340868 (-)
AMCG00015493 zbtb3,LOC107602571 other downstream 195790 10195564 ~ 10198654 (-)
AMCG00015497 NA other downstream 200586 10188842 ~ 10193858 (-)
AMCG00015479 NA other downstream 368425 10018764 ~ 10026019 (-)
AMCG00015519 zmp:0000001168,sipa1,LOC108430456 other upstream 250329 10655185 ~ 10704395 (-)
AMCG00015524 NA other upstream 438829 10843685 ~ 10849421 (-)
AMCG00015532 NA other upstream 607794 11012650 ~ 11237850 (-)
G98502 NA other upstream 609769 11014625 ~ 11245562 (-)
AMCG00015535 NA other upstream 781004 11185860 ~ 11261168 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000059_05697477_05708333 KAT5B, KAT5, KAT5A coding CI01000059 null 5696738 ~ 5708333 (-)