AMCG00015515 (bbs1,LOC107579588)


Basic Information

Item Value
gene id AMCG00015515
gene name bbs1,LOC107579588
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10530053 ~ 10538036 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015515
GCGGGGACACCGCTGCCCGCTGCCATAGCGACCGGCAAAGCGGATTAGCGGAATCTGCGAAACCTGGGGTGTGAATCGGAGTAAAACCACATTAAACACACTTCTCCCATGACCGGGACGCGGCTCTGTTGAGGAGAGCAGCAGCGATGGCCACAGCCCCGGCGGAGAGCAAAGAGAAtgtcGAGGCCAATTCCAAGTGGCTGGACGCTCACTACGACCCGGTGGCCAGCCTGTACACCTTCTCCTCATGCATTGGTAAGGATGAGCCAGTGTATGTGGAGGACGGGGTCTTTGATGTACATCTGAAGCTCTGGCCGATTTGCACGGCGATGGAGAAAGCAAGTGTGACCCGTGCTGTGTTGCAGCTGGTGGTGGGCGACCTGGGCACGGGGGTGTAcaacatgaagatgaaggtGTATCGCGGCACCAGCCTGATGAGCGAGAACACCCTGCTGGACCTGCCCACCGGCCTGGTGGCCTTCCTCATGGACCAGCACGAGCCGCGCACCCCCGCCGTGGCCGTGGCCTCCGGGCCCTTCATCTACGTCTACAAGAACCTGCGGCCCTACTTCAAGTTCACCCTGCCCCCGCTGGAGGTCAACAGCCTGGAGCAGGAGGTGTGGAGCCAGGCCAGGGAGGATAAAATTGACCCCATGTCCTTAAAGGAAATGCTGGAGGGAATCCGGGACAAAGCAGACGTCCCGCTGTCGGTCAGATCTCTCAAGTTTCTGATGCTGGACCCCCAGGAGATGGAAGCCTATGTCAACCTCCACAAGCAGCAGCCAATCAGACGGCAGACGGTGATCACCTGCATCGGCACCCTGAAGAAGAACATGGCGGACGAGGACGCGGTCAGCTGCCTGGTCATCAGCACGGAGAGCCGGGACGTCTACGTGCTCGACCCAGAGGCCTTCACCATCCTGCACAAGATGACCCTGCCCAGCGTGGCCACCTTCATGGATGTGACCGGCCAGTTTGACGTGGAGTTCAGGATCACGGTGGCCTGTCGCAACGGCAACATCTACATCCTCCGCAGGGAGTCTTCCAAGCCCAAGTACTGCATTGAGCTGAGCTCCCACCCGGTGGGGCTGGTGAGAGTGGGCAAGAACGTGGTGGTGGGCTGCACCCAGGAGACGCTGCACGGCTACACACAGAAGGGGAAGAAGCTGTGGACAGCCTACCTGCCAGCTGCCATCACCACCATGGGCCTGATGGACCACCATGTCCGGGGCTTCCAGGCTGTGCTGGTGGGGCTGGCCAACTACGAAGTGCACCTGTACCGCGACAAGAACCTCATCAGCACCATCAAGACACCGGACGTGGTAACGAGCATTTGCTTTGGGAGGTACGGCCGAGAGGAGGGCACCCTGGTCATGACCACCAAGGGCGGGGGTCTGATGGTGAAGATTCTGAAGCGCACGGCGGTGTTCGAGGACCGGGACAGCACCCCCGGCCCCCCCGTGGCCCAGAGCGTGCGGCTCAGCGTGCCCAAGAAGACAAAGCTGTACGTGGACCAGACCATGAGGGAGCGCGAGAACGCCGTGGACATGCACAGAGCCTTCCAGATGGACCTGTACCGGCTTCGGCTGGCAGCGGCGAGGGCTTACGTCAAGGCCCTGGAGTCCAGCCTCACCCCCATGTCCGCCAGCCTCTCTGAGCCCCTGAAGATGAATGCCGTGATCCCCCTGCTGGTGCCCGGTCTGAACTACCCCATCGACACCTTCGTGGAGTGCCTGAGTGACAAGGGGATCTCTGACCTCATCAAGGTGTTTGTGCTGCGAGAGGGGAAGAGCGCCCCCTTGCTGACGGCTCACATCAACATGCCGGTGAGTGAGGGGATGGCCCTGGACTGAGGGGCTGAAGATGCTGCAAACCCACTCACTCCTCAGCCTGTgggctgcacagacacacacacacgcagactgacacacacacacgcacacacacacacacacacacacacacacacaaagtgactgacactgactggaCTTCATGATTCCATTGCTGCACACGGAGAGGGACGTATCGAATGTGGTATCGAATGGTACCGATTGAGTCACATACGTACCGGCGCTTCTAGTGAATCAGTGATGAGGTGTGTGCCGATTGTGCTCAGTTTAGGAGGCGCTGAAATGGttagatacatttttgtaaaagatCACCCTGTAAGATTGTTTTatcatgtaatgtatttatttgtatctgtttgtAAGCTGTACCGTGGACTGTAGGAGAccttgtgtgtaaatatatataagcacTGAATAAAGTACACGTTTGCTGACATGCTGGAGAGCTTTAAACCGCTGGGTCATTGAAGACGATCACACACCTAAACCCAGAGCCCTGCTGTTGCCAGGTCTCTT

Function

symbol description
bbs1 Predicted to enable patched binding activity and smoothened binding activity. Acts upstream of or within several processes, including Kupffer's vesicle development; melanosome transport; and morphogenesis of an epithelium. Predicted to be part of BBSome. Predicted to be active in axoneme; centrosome; and ciliary basal body. Is expressed in eye; kidney; and testis. Used to study Bardet-Biedl syndrome. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome and Bardet-Biedl syndrome 1. Orthologous to human BBS1 (Bardet-Biedl syndrome 1).

NR:

description
PREDICTED: Bardet-Biedl syndrome 1 protein isoform X2

GO:

id name namespace
GO:0032402 melanosome transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0033339 pectoral fin development biological_process

KEGG:

id description
K16746 BBS1; Bardet-Biedl syndrome 1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015515 True 2369 mRNA 0.58 16 10530053 10538036

Neighbor

gene id symbol gene type direction distance location
AMCG00015514 NA coding downstream 24834 10493140 ~ 10505219 (-)
AMCG00015508 NA coding downstream 69318 10450229 ~ 10460735 (-)
AMCG00015506 drap1 coding downstream 93043 10431798 ~ 10437010 (-)
AMCG00015507 kat5,LOC106603125,LOC106563454 coding downstream 125197 10394444 ~ 10404856 (-)
AMCG00015500 zdhhc24 coding downstream 174088 10353209 ~ 10355965 (-)
AMCG00015518 NA coding upstream 96879 10634915 ~ 10636279 (-)
AMCG00015526 NA coding upstream 238794 10776830 ~ 10795268 (-)
AMCG00015523 NA coding upstream 260384 10798420 ~ 10803527 (-)
AMCG00015525 NA coding upstream 272493 10810529 ~ 10816296 (-)
AMCG00015527 NA coding upstream 279643 10817679 ~ 10839852 (-)
G98314 NA non-coding downstream 36947 10489579 ~ 10493106 (-)
G98216 NA non-coding downstream 307528 10173101 ~ 10222525 (-)
G98211 NA non-coding downstream 364656 10107233 ~ 10165397 (-)
G98163 NA non-coding downstream 454160 10026114 ~ 10075893 (-)
G98138 NA non-coding downstream 591731 9937076 ~ 9938322 (-)
G98399 NA non-coding upstream 170385 10708421 ~ 10708752 (-)
G98510 NA non-coding upstream 605482 11143518 ~ 11149864 (-)
G98591 NA non-coding upstream 1009599 11547635 ~ 11547875 (-)
G98648 NA non-coding upstream 1907962 12445998 ~ 12446953 (-)
G98649 NA non-coding upstream 1909552 12447588 ~ 12447829 (-)
AMCG00015501 NA other downstream 144674 10378285 ~ 10385379 (-)
G98269 taf6l other downstream 189185 10288026 ~ 10340868 (-)
AMCG00015493 zbtb3,LOC107602571 other downstream 331399 10195564 ~ 10198654 (-)
AMCG00015497 NA other downstream 336195 10188842 ~ 10193858 (-)
AMCG00015479 NA other downstream 504034 10018764 ~ 10026019 (-)
AMCG00015519 zmp:0000001168,sipa1,LOC108430456 other upstream 117149 10655185 ~ 10704395 (-)
AMCG00015524 NA other upstream 305649 10843685 ~ 10849421 (-)
AMCG00015532 NA other upstream 474614 11012650 ~ 11237850 (-)
G98502 NA other upstream 476589 11014625 ~ 11245562 (-)
AMCG00015535 NA other upstream 647824 11185860 ~ 11261168 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_03244690_03253311 BBS1 coding CI01000006 null 3244573 ~ 3253311 (-)