AMCG00015524


Basic Information

Item Value
gene id AMCG00015524
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10843685 ~ 10849421 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015524
aaaaaaaaaaaaaaaaaaaacgtgttttattgaatttgcCAGTGTCACACAAACAGCCAATTAAACTGCTAAATTTCGGAGGTGGGCTTTCAATTCGGGCAGTTTGGGGCGTGTCAGTGTCTCCGAGTGAATATAAAGCTGCTTCAGGTCCGCAAACTCAGCAGCTTCTGTTCTCAATATTTTTGTTCAACTAGAAACTAAGCATCTTCCGCAGCCATGAGTCTCTCCGCTAAGGACAAGCAGAACGTCAAGGCTCTCTGGGGCAAGGCTTCCAGCAAGCTCGACGACATCGGCCACGAAGCTCTGGCCAGGATGCTGTACGTCTATCCCCAGACCAAGACCTACTTCTCCCACTTCTCCGACATCAGCTACGGCTCTGCCCCAGTGCGCAAGCACGGCAAAACCATCGTCGGCGCCATCACCGATGCTGTGAATAACATCGATGACCTGGCCGGCTCCGTGGGCGTCCACAGCGAGCAGCATGCCTTCAAGCTGCGGATTGATCCTGCCAACTTCAAGATCCTCTCCCACAACTTCATTGTGGCCGTGGCATACTTCTTCCCTGGAGATCTCACTCCCGAGGTGCACGTCTCCCTGGACAAGTTCCTCGCCGCCCTGTCCCATGCTCTCTCTGAGAAGTACCATGCCGAACGTGCCGCCATCGCTGCTATCTGGGGCAAAATTAAGGTCGAAGAAGTCGGACCCCATTCCCTGGCCAGGCTCCTGATCGTGTACCCCTGGACTCAGCGTTATTTCGGAAGCTTTGGAAACCTCTCTAACGCCGCTGCCATCCTCGGCAACGCCAAGGTCGCCCACCATGGCGCAGTCGTCCTGGGGGAGCTGGACAAGGCTGTGAAGAACTTGGACCACATCAACGAGACCTTCTCCAAACTCAGCGTGCTGCACTCCGAGAAACTGCACGTTGACCCCGATAACTTCAGGCTGCTGGGTGACATCATCACCATCGTCTTGGCTGCCCAGTTGGGATCCTTCTTCACCGTCGAGTACCAGGCCGCCTGGCACAAGTTCCTGGATGTTGTCATCAGCGCTCTCCGCAGACAGTACCACTAGAGCCCCCCCAACCCAGCCGCCGTGCCCCTCTATCCGGCACGGCACAGACGCACAGAAACGACCATCAAACCTTCACTGTGTGATTCCATAACTGGCTGTACTTATGtttgagaacaaaaataaataaatacatttaaaagcattgtaTGAAAACTGTTTGTGCTTCTTTTCAATTAATGTAGGTTAACTTCACGAATAAaaggggaatatatatatatttattcatatccAAG
>TU122857
GCTTCTGTTCTCAATATTTTTGTTCAACTAGAAACTAAGCATCTTCCGCAGCCATGAGTCTCTCCGCTAAGGACAAGCAGAACGTCAAGGCTCTCTGGGGCAAGGCTTCCAGCAAGCTCGACGACATCGGCCACGAAGCTCTGGCCAGACCAAGACCTACTTCTCCCACTTCTCCGACATCAGCTACGGCTCTGCCCCAGTGCGCAAGCACGGCAAAACCATCGTCGGCGCCATCACCGATGCTGTGAATAACATCGATGACCTGGCCGGCTCCGTGGGCGTCCACAGCGAGCAGCATGCCTTCAAGCTGCGGATTGATCCTGCCAACTTCAAGATCCTCTCCCACAACTTCATTGTGGCCGTGGCATACTTCTTCCCTGGAGATCTCACTCCCGAGGTGCACGTCTCCCTGGACAAGTTCCTCGCCGCCCTGTCCCATGCTCTCTCTGAGAAGTACCGTTAAGACGCAGACCAAGAAGACCCAGGCAGACATCATGCTCAATCCAGCTCTGTCTTGTGTTGtctgaaaattaataaaaaataatgcaaacgaattaatttgactgtttttc

Function

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0005833 hemoglobin complex cellular_component
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015524 True 1304 mRNA 0.52 6 10843685 10849421
TU122857 False 572 lncRNA 0.52 3 10848289 10849258

Neighbor

gene id symbol gene type direction distance location
AMCG00015527 NA coding downstream 3833 10817679 ~ 10839852 (-)
AMCG00015525 NA coding downstream 27389 10810529 ~ 10816296 (-)
AMCG00015523 NA coding downstream 40158 10798420 ~ 10803527 (-)
AMCG00015526 NA coding downstream 48417 10776830 ~ 10795268 (-)
AMCG00015518 NA coding downstream 207406 10634915 ~ 10636279 (-)
AMCG00015531 actn3,LOC101158802 coding upstream 75440 10924861 ~ 10941495 (-)
AMCG00015530 NA coding upstream 127994 10977415 ~ 10985210 (-)
AMCG00015534 NA coding upstream 140461 10989882 ~ 10994885 (-)
AMCG00015533 NA coding upstream 148128 10997549 ~ 11007375 (-)
AMCG00015536 NA coding upstream 329671 11179092 ~ 11183890 (-)
G98399 NA non-coding downstream 134933 10708421 ~ 10708752 (-)
G98314 NA non-coding downstream 350579 10489579 ~ 10493106 (-)
G98216 NA non-coding downstream 621160 10173101 ~ 10222525 (-)
G98211 NA non-coding downstream 678288 10107233 ~ 10165397 (-)
G98163 NA non-coding downstream 767792 10026114 ~ 10075893 (-)
G98510 NA non-coding upstream 294097 11143518 ~ 11149864 (-)
G98591 NA non-coding upstream 698214 11547635 ~ 11547875 (-)
G98648 NA non-coding upstream 1596577 12445998 ~ 12446953 (-)
G98649 NA non-coding upstream 1598167 12447588 ~ 12447829 (-)
G98650 NA non-coding upstream 1599875 12449296 ~ 12449821 (-)
AMCG00015519 zmp:0000001168,sipa1,LOC108430456 other downstream 139290 10655185 ~ 10704395 (-)
AMCG00015501 NA other downstream 458306 10378285 ~ 10385379 (-)
G98269 taf6l other downstream 502817 10288026 ~ 10340868 (-)
AMCG00015493 zbtb3,LOC107602571 other downstream 645031 10195564 ~ 10198654 (-)
AMCG00015497 NA other downstream 649827 10188842 ~ 10193858 (-)
AMCG00015532 NA other upstream 163229 11012650 ~ 11237850 (-)
G98502 NA other upstream 165204 11014625 ~ 11245562 (-)
AMCG00015535 NA other upstream 336439 11185860 ~ 11261168 (-)
AMCG00015540 NA other upstream 483242 11332663 ~ 11345490 (-)
G98543 NA other upstream 504362 11353783 ~ 11386199 (-)

Expression


Co-expression Network