AMCG00015531 (actn3,LOC101158802)


Basic Information

Item Value
gene id AMCG00015531
gene name actn3,LOC101158802
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10924861 ~ 10941495 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015531
agactttCACAGCCTGGTGTAACTCTCACCTGCGTAAAGCCGGTACCCAGATCGAGAATATTGAGGAGGACTTCAGGAATGGGCTGAAACTCATGCTGCTGCTGGAGGTCATTTCAGGTGAGAGGCTGCCCAAACCAGACAAAGGCAAGATGCGCTTCCACAAGATCGCCAATGTCAACAAGGCCCTGGACTTCATCTGCAGCAAGGGGGTCAAGCTGGTGTCCATTGGAGCTGAGGAGATCGTGGATGGCAATACAAAGATGACTTTGGGTATGATCTGGACTATCATCCTGCGCTTCGCCATTCAGGACATATCTGTGGAGGaaaccTCGGCCAAGGAGGGGCTGCTGCTGTGGTGCCAGAGGAAGACTGCCCCCTACCGGAATGTCAATGTTCAGAACTTCCACATCAGCTGGAAGGATGGCCTGGCATTGTGCGCTctcattcacagacacagacctgATCTCATTGATTACTCCAAACTGAGAAAGGATGACCCCATCGGCAATCTGAACACTGCCTTTGAAGTGGCCGAGAAGTTTCTGGATATCCCTAAAATGCTGGACGCTGAAGATATTGTGAACACCCCCAAACCGGATGAGAAAGCCATCATGACTTACGTGTCCTGCTTCTACCACGCCTTTGCCGGAGCAGAGCAGGCCGAGACTGCTGCAAACAGGATCTGCAAAGTTCTGGCTGTTAACCAGGAGAACGAGAAACTGATGGAAGAATACGAGAAGCTGGCAAGCGAGctgCTGGAGTGGATCCGTCGCACCATCCCCTGGCTGGAGAACCGCGCGGCCGAGCAGAGCATGCGTGCCATGCAGCAAAAGCTGGAGGACTTCCGTGATTACCGCCGTGTGCACAAGCCCCCCCGCGTGCAGGAGAAATGCCAGCTGGAGATCAACTTCAACACCCTGCAGACCAAGCTGCGCCTCAGCAACCGCCCCGCCTTCATGCCCTCCGAGGGCAAGATGGTCTCGgacattGCCAATGCCTGGAAGGGTCTGGAGCAAGTGGAGAAAGGCTATGAGGAGTGGCTGCTGACTGAGATACGGAGACTGGAGAGACTCGATCACCTGGCTGAAAAGTTCAAGCAGAAGTGCGCCCTGCATGAGAGCTGGACCACCGGGAAAGAGGATCTGCTGTCCCAGAAGGACTACGAGTCGGCCTCGCTGATGGAGATCCGCGCCCTGATGCGGAAGCACGAGGCCTTTGAGAGCGACCTGGCTGCCCACCAGGACAGAGTGGAACAGATTGCCGCCATCGCACAGGAGCTcaaTGAACTGGATTATCACGATGCTGCCACTGTCAACGCCCGCTGCCAGGGCATTTGTGACCAGTGGGACAACCTTGGCACCCTCACCCAGAAGAGGAGAGACTCCCTGGAGCGCGTGGAGAAGCTATGGGAGACCATCGACCAGCTGTACCTGGAGTTCGCCAAGAGGGCGGCGCCCTTCAACAACTGGATGGACGGAGCCATGGAGGACCTGCAGGACATGTTCATTGTGCACAGCATTGAGGAGATCcagAGCCTGATCACAGCCCACGAGCAGTTCAAGGCCACCCTTCCCGAAGCAGACAAGGAGCGCATGGCCACTATGGGCATCCAGAACGAGATCATGAAGATCGCCCAGACCTACGGCATCAAGTTGTCTGGCGTGAACCCCTACACCAACCTCTCCCCCCAGGACATCAGCAACAAATGGGAGGCGGTCAAACACTTGGTTCCCCTCAGAGACCAAATGCTGCAGGAGGAGGTGGCACGGCAGCAGGCCAACGAGAGGCTCCGGCGCCAGTTTGCCGCCCAGGCTAACATCATTGGACCCTGGATTCAAACCAAGATGGAGGAAATTGGTCACATCTCAGTGGACATGGCCGGGTCCCTGGAAGATCAGATGAACAACCTGAAGCAGTACGAGCAGAACATCATCAACTACAAGTCCAACATTGACAAGCTGGAGGGCGACCACCAGCTCATCCAGGAGGCCCTGATCTTCGACAACAAGCACACCAACTATACCATGGAGCATATCCGTGTAGGCTGGGAGCAGCTGCTGACCACCATTGCCCGCACCATCAACGAGGTGGAGAACCAGATTCTGACCCGCGATGCCAAGGGCATCAGCCAGGAGCAACTCAACGAGTTCAGGGCCTCCTTCAACCACTTCGACAGGAAGAGGAATGGCATGATGGACCCAGACGACTTCCGCGCTTGCCTGATCTCCATGGGCTACGATCTGGCACAAGAGGTGTCCTACTCTGTGCCGCTGCCACGTGAGTCGTCCTCACCATGCTGCGTCCGCTGTGGTGAGGTGGAGTTTGCCCGCATCATGACCCTGGTAGACCCCAACAACACAGGCGTGGTGACCTTCCAGGCCTTCATTGACTTCATGACCAGAGAGACGGCTGAGACAGACACTGCCGAACAGACCTACATCACAGTGGACGAGCTGCGGCGGGAGCTGCCCCCAGAGCAGGCAGAGTACTGCATCAGCCGCATGACCAAGTACATCGGCTCGGACGCGGCGCCCGGAGCCCTGGACTACATCTCCTTCTCCAGCGCCCTGTATGGGGAGAGCGACTTGTAAAGCACACCCACAaccccgcccccccctccctcaTCCCCCACCTCGTCCCTTGTCCTCTACTCTCAtcccccagcccccccctcCCACTCCCCCACCCATCCCATCCTGGCTCTGAGATACACAGAGATAGGAAGGCTTTGCTCAgactcctccacacacacacacacatgcgcacacgcgcacacacacacacacacacaatttgcaCATGCCATTAGCAGATTACCATCGGAAAGGCTGATGTACCCCTGATGTCACTGTAATCACCCTGGCAGGGATCCCCTATGTGAaatctgtcattttctttcttaaatccCTTCTCCCATTGACATCTTCCACCCAACAGTACAGGCTCGGATTTCACGTTCAGCAATTGTGGTAACAAGGCTTTAATGACGTCTCAATTTCTAGTCCCCtataccttttttatttatctatttatttattggtttgtgtTCGTTTTCACCTCTGTTATCCTATCAGTATATGCTGAGCAAACCCTCCCTCTCCCTGGGGTTTTCGGGGCAagaaagcaaatcaaaataaataaatctctgaaagagaaaaaggcaaAGTACCTTACCTAATATTGGCTGATTACTTTTTTGCAGATGcatgcagtgtttgttttagaaaagcTATCGATGGTCACTTCTCCTCACGCTACTGCACCATTGTCCACCTTCTTTAGGCCTGTGATAAAGTCCCCCTAGCAGAGGTACTGTGATCTGTCACGTATGTCTTAACAGTAGTCAGGAAGCTGTTGACAACAGAAGAACataatcaataatttaaaaaaaaaccgaatcaaataaataaataagggaaaTCAGATCTGAAGCTCTGATTAtcatatattttcttctattcTTGTTTGTGGCTAAGCAGGTGTGACACTGAGATGAGCGTGTGGTAGCCATGGTTATGGGGCGGGGCAGGGGAGGGGTGGGGTATAGTAGGGTGGGGTAGGGGGGAG

Function

symbol description
actn3 Enables identical protein binding activity and transmembrane transporter binding activity. Involved in focal adhesion assembly. Located in focal adhesion.

NR:

description
alpha-actinin-3 isoform X2

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K21073 ACTN2_3; actinin alpha 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015531 True 3567 mRNA 0.54 21 10924861 10941495

Neighbor

gene id symbol gene type direction distance location
AMCG00015527 NA coding downstream 85009 10817679 ~ 10839852 (-)
AMCG00015525 NA coding downstream 108565 10810529 ~ 10816296 (-)
AMCG00015523 NA coding downstream 121334 10798420 ~ 10803527 (-)
AMCG00015526 NA coding downstream 129593 10776830 ~ 10795268 (-)
AMCG00015518 NA coding downstream 288582 10634915 ~ 10636279 (-)
AMCG00015530 NA coding upstream 35920 10977415 ~ 10985210 (-)
AMCG00015534 NA coding upstream 48387 10989882 ~ 10994885 (-)
AMCG00015533 NA coding upstream 56054 10997549 ~ 11007375 (-)
AMCG00015536 NA coding upstream 237597 11179092 ~ 11183890 (-)
AMCG00015541 NA coding upstream 330044 11271539 ~ 11322500 (-)
G98399 NA non-coding downstream 216109 10708421 ~ 10708752 (-)
G98314 NA non-coding downstream 431755 10489579 ~ 10493106 (-)
G98216 NA non-coding downstream 702336 10173101 ~ 10222525 (-)
G98211 NA non-coding downstream 759464 10107233 ~ 10165397 (-)
G98163 NA non-coding downstream 848968 10026114 ~ 10075893 (-)
G98510 NA non-coding upstream 202023 11143518 ~ 11149864 (-)
G98591 NA non-coding upstream 606140 11547635 ~ 11547875 (-)
G98648 NA non-coding upstream 1504503 12445998 ~ 12446953 (-)
G98649 NA non-coding upstream 1506093 12447588 ~ 12447829 (-)
G98650 NA non-coding upstream 1507801 12449296 ~ 12449821 (-)
AMCG00015524 NA other downstream 75440 10843685 ~ 10849421 (-)
AMCG00015519 zmp:0000001168,sipa1,LOC108430456 other downstream 220466 10655185 ~ 10704395 (-)
AMCG00015501 NA other downstream 539482 10378285 ~ 10385379 (-)
G98269 taf6l other downstream 583993 10288026 ~ 10340868 (-)
AMCG00015493 zbtb3,LOC107602571 other downstream 726207 10195564 ~ 10198654 (-)
AMCG00015532 NA other upstream 71155 11012650 ~ 11237850 (-)
G98502 NA other upstream 73130 11014625 ~ 11245562 (-)
AMCG00015535 NA other upstream 244365 11185860 ~ 11261168 (-)
AMCG00015540 NA other upstream 391168 11332663 ~ 11345490 (-)
G98543 NA other upstream 412288 11353783 ~ 11386199 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000343_00521663_00538782 ACTN3, ACTN3A, ACTN3B, ACTN3.L coding CI01000343 null 521663 ~ 539985 (+)