AMCG00015556


Basic Information

Item Value
gene id AMCG00015556
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 12463056 ~ 12469988 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015556
CAGTTAAAGTAGGTGTGACTTCACTTGGTAAAGGTTGAGAAATCTCTGCTGGAGACAACAGTAAATCTTGTCCCCTTTGAGTATCAGGACGACCTCTACTTCTGattctgtttttctgattttctgattttcttcaGAATTCAGTGAACCATGGAAAAAGGCCAGTTTCGGTGTGAGATGAAGGATATGTGGAAGGAGTTTTCCAAGGAGGCCACGGTGGAGGAAGTGATGCTGGACTCCACTGCGCAGCTCCTGACGAAGCATGAGCTGCCCGAGATCATGGCCCTGGTGCCTAGCCTGGAGGGGCTCACCGTGCTGGAGCTGGGAGCCGGCATCGGACGCTACACGAGACAACTGGCAAAGATGGCACGTCACGTGACTGCTGTTGACTTCACTGCCAAGTTTGTGAACAAGAACAGGGAGGAGAACGGTCACCATGACAACGTCGACATCATTCAAGCTGACGTCACCGTGCTGGACTACCCAAACGACAGCTTTGACCTGATCTTCTCCAACTGGCTGCTGATGTACCTGACTGACGAGGAACTGCTCTCTCTCACCGAGCGCATGCTGAGCTGGCTGAGACCCGGGGGATACCTCTTCTTCAGGGAGTCCTGCTTCCACAAATCAGGGGACATCAAGGTGGCCTCTAACCACACAAACTACCGAACACCCGCAGTTTATAATGACCTAATGATGTCAGTTGTGTGGGAGGAGCCAGAACCTGGGAGATGGGTCTATAGGTTTGATGTCACCTTGACAAAGGCTGTGGAGACTTACATCAAGCTGAAGAACAACCACAATCAGATCTGCTGGCTGATGCAGAAAGTCGTGAAGGATGAGAAGACCTTTGTCCAGTGATAGATAAGCACAAGAGGACTTGAAACCACCATATTAGGCCTAATCCTGCAGCACCATGACTTTCTAAGAATTAAGGATGATGTAATGTTCAAATTGGTAAAGTTCTCATGAATGTCCAGTTTTTACATAAAATCCTAGGTTTCTATGTAATGCATTACATGCAGAGATAACACTATATTCTGTTTAAGACTAAAACAAACTTCTCACCCCTTTAAGAACCCAGGGTGAtgtatagttaggtccatacatatttggatagtgacacagttgtcatcattttggctctgtatgccaccacaatggatttgtgaagggtttttcttcaacagggaaataattcttctgtcatccaccacagtcgttgtccgtggtcttctgggccttttggtgttcctgagctcaccagttcattctttcttttttaagaatgtaccaaatagttgatttggccacacctaatgtttttgctatctggtttgttttgatttctcatgatggcttgcttcactcgcagtggcagctctttggacttcatattgagggttaacagcaaatgacacacttgaaatcaaatcattttatctgcttacctgtaattgaactaatgacgGAATAAACACACCTGGCCATGggacagctgagacagctgagctgCCAATTGTCCAAtaacttttgagcccctaaaattggtgggaccacatatgaaaatgtgtttaattcctacactgttcacccaatttggatgtaactaccctcaaattaaagatgaatgtctacacttaaagcacatattgattgtttcctttcaaatccattgtggtggcgtacagagccaaaatgataagtgtatcactgtccaaatatttatgtacctaactgtatatgtcaTGTACACACAAGAGGCTTGGCAACAATTTACTGGGTGGATGGATGAGTTTCAAAAGATGTCCTTCAACTGAGCGAAACATCTCACACCCCATAGTCAGGGGGAGAAATCCAAGGACACTCCTGTGTatcaataaaagaaaactgctgTTCTTGTTGTGCTGCCAAGAAACGGCAATCAGGATTTTTGTCAGTGACATCACAATTGGAAGACAAACTAAACATCACCATTACCAAAATGCACAGAATTTCAAattctgtattattatgatttaagaTATGGTTAAACGTTGGGTTGTGAACGTTTGTGGGAATTCCAGTGTGATTGGACATAGTATCCACCATTTCCCAAAAGATCCCGTAAGGAGACGTTGGGTTAAAtttgcacaaataaaaataaagcattctgTGAACACTTCACCCATGACAGCTTTTCAAATGTTGTAAAGTCACGATGTGGTTTACCAAGAAACTACCCACTATACAGCCTgtacaaaatgaacagaaaaatctAACAAAAGATTCACAGAGACAGACTGGGACTAAAAATGGCCCTGTggatgtaattttaaaatacagattttctgCCTAAATAGATATACCCAAAATGATGCATCATGAGAGGGTCATAC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
K05929 E2.1.1.103, NMT; phosphoethanolamine N-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015556 True 2378 mRNA 0.43 6 12463056 12469988

Neighbor

gene id symbol gene type direction distance location
AMCG00015541 NA coding downstream 1140556 11271539 ~ 11322500 (-)
AMCG00015536 NA coding downstream 1279166 11179092 ~ 11183890 (-)
AMCG00015533 NA coding downstream 1455681 10997549 ~ 11007375 (-)
AMCG00015534 NA coding downstream 1468171 10989882 ~ 10994885 (-)
AMCG00015530 NA coding downstream 1477846 10977415 ~ 10985210 (-)
AMCG00015560 NA coding upstream 11734 12481722 ~ 12507107 (-)
AMCG00015562 NA coding upstream 103475 12573463 ~ 12574052 (-)
AMCG00015561 NA coding upstream 153270 12623258 ~ 12640668 (-)
AMCG00015568 NA coding upstream 293924 12763912 ~ 12779914 (-)
AMCG00015570 NA coding upstream 309950 12779938 ~ 12780493 (-)
G98658 NA non-coding downstream 4983 12457626 ~ 12458073 (-)
G98657 pcnx3,LOC108279110 non-coding downstream 6850 12455930 ~ 12456206 (-)
G98656 pcnx3,LOC106602984,LOC107715400 non-coding downstream 8201 12454625 ~ 12454855 (-)
G98654 NA non-coding downstream 9082 12453613 ~ 12453974 (-)
G98653 NA non-coding downstream 9507 12453240 ~ 12453549 (-)
G98662 NA non-coding upstream 110 12470098 ~ 12470440 (-)
G98671 NA non-coding upstream 53805 12523793 ~ 12524075 (-)
G98836 NA non-coding upstream 778848 13248836 ~ 13249283 (-)
G98844 NA non-coding upstream 791023 13261011 ~ 13262227 (-)
G98953 NA non-coding upstream 859904 13329892 ~ 13335929 (-)
AMCG00015557 map3k11,LOC101463885,LOC102206973,LOC102778058,LOC100707946 other downstream 32408 12399733 ~ 12430648 (-)
G98546 NA other downstream 1046394 11414367 ~ 11416662 (-)
G98543 NA other downstream 1076857 11353783 ~ 11386199 (-)
AMCG00015540 NA other downstream 1117566 11332663 ~ 11345490 (-)
AMCG00015535 NA other downstream 1201888 11185860 ~ 11261168 (-)
AMCG00015598 timm10,LOC107746912,LOC107674252,LOC107556822 other upstream 988139 13458127 ~ 13468822 (-)
AMCG00015606 NA other upstream 1201327 13671315 ~ 13845677 (-)
AMCG00015612 zdhhc5a,zdhhc5 other upstream 1364529 13834517 ~ 13864738 (-)
AMCG00015628 NA other upstream 1824980 14294968 ~ 14336329 (-)
G99213 NA other upstream 1977723 14447711 ~ 14456695 (-)

Expression


Co-expression Network