AMCG00015574


Basic Information

Item Value
gene id AMCG00015574
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 12938665 ~ 12944741 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015574
CAGTTGTGAAAGCAAACCTACGCCACTGAACATACTTTTAGGCTATTGCACATTGTCGTCGCatgtagagaaaaaaacaagtgtacATCATAGTCGGACAGGTAGGAAACACAAATATCGTTATATAGACATACTAAAATTTAGAGAAGCACACACATGGCAAATTCCTAGtctacagaaacacacacaccaaattaCGTTTACAAAAAAGGAAGTGATCCTCTTCAAAGTTTCTCTTTCAGTGTCACACGAGCAATCACGCACAACAAAGTGCGCTAGCTAGCGAGATCACAGCTTATGGGGGCTTCCCATTAAAATAGCATGACTTGATGGACTTTAAATAAACGAGTGATATTACATATAGACTAGCCTACAATTCATATTTACAGAAAATTGTACAAGTTTAACctcttgcatttaaataaagaaaaataagtatatagagagaaaaacagtctacttttttattattatttgttaaagaAAACGTAGCCAGACATCATGTCGATTTGCGTTTCATTCTCACTATTAATGACCCTCTTGATCTGGGCACCAAAGTGCAACTGCCGTCCTCTGGCTATGAGAACCGACAGCGGAATCCGAGAGTGCAAGAAGACCATGGCGAATACCCCAGCGCTGGAGGTGCTGCCCGGGGGCGGCTGGGACAACATCCGCAACCTCGACATGGGCCGGGTGATGAATCTGACCTATTCCCTGTGTCAGACCACTGAGGACGGCGCTTATCTCATCCCCGACGAGGTGTTTGTGGTCCCACAGAAAGTCAGCAATGTCGAGACCAATTCAGAGATAATCGAGAGCTGGCTGGACCAGCGCAGCTCTGTGGCCAGCTCTATCAATACTGATGTCTCTTTTTCCGGCGTCCTCAATGGCAAATTCTCCACCGAAAATGAGCGAATGAAAACGCACCAGGTGCGGGAGGGCTCCTTCACTACCCGAGTTCAGGTGCGCAACCTAATCTACAGTGTCAAAACAATACCAGGCTTCTCTTTTGACCCACGGTTCGAAATGCGAGTGGGGGAAATTGCGAGTGCCCTGGAGAACAATCAGACACACCAAGCCGCCTTCCTCTCTGAGACACTGGTACTGGAGTATGGCACTCATGTCCTGACTTCGGTGGACGCTGGTGCTAGCCTGGTGCAGGAGGACTATGTCCGTGCGTCCTTCCTTTCTGATGGGAATGTGGTCCGTTCCTCCATCAGTGCATCAGCCGGGATCAACTTCTTCAATAAGGTTAACATTGGGTTTGACTGGAATAAGTCAAATACAGATTCCCTCACAAAAGGCTACCAGGGCAACACTACCTATTCTCTGACCCAGGGCCATGGTGGAGTGCCTTTCTACCCTGGAATCACCTTGCAGAAATGGCAGGAGAACACTGCTAACAACCTGGTGGCTATTGATCGCTCTGGACTCCCATTGCATTTCTTCCTTAACCGAGACACCCTCCCAGATTTGCCAGAGCCTGCAGTTGAGAAGCTGTCAAAATGTGTCAGTCAAGCCATTGAACGCTACTACATGATCAACACCCATCCAGGCTGCGTTAAACCTGACTCCAAGAACTTCAACTTCCAGGCCAATGTAGATGATGCTTCTTGTGATGGCCCAGTCACTAATCTTAGTTTTGGAGGTGTTTACCAGCAGTGTACTGAGCTCAGCCAAGACGCTCGGATCCTCTGCCAGGCGCTGGCCCAAAAGAACCCACAGACAGGCTCCTTCTCATGCCAAAAGCCCTATCAGGCAACCCACCTACGTTCAGAAGTGAAGGAGGAAGGGTATAGCCAGTTAGAGTGCCATGTAGAGTGCCACAGCTGCTGGCTGTTCTTCTCCTGTTGCAAAAAAGTCTGTGGGGATGCGTACCATGTGCGCAGGGTGAAGATTGATGCCTATTTGTGTACCACCAATGGGACAGCCCCAGAATTCTCAGGGTATCTTTTTGGAGGGCTTTATGGACCCTCCTTGCAGAACCCACTCACAAAATCAAAGGGCTGTCCCCCAGCCTACATTGCTCTCTCTCTACTGGGTGATGGACTGAAGATCTGCCTCAGTGATGACTATGAAATGGGTACCCGCTTCTCAGTACCTTTTGGAGGGTTATTCAGCTGTGAGTCAGGCAATCCTCTGGCGGGAGGGCTCTCAAAATGCCCATCTGGATTCAGTCAGCACTTAGCAGGGGTCAGTGATGGGTGTCAAATGCTTTATTGTGTGCGATCAGGGATTTTCACTGGTGGGGAGCTCCTGCCCATCCGTCTACCCCCCTTCACTCGTTCACCACTTATCAGTCTCAGTGCCACTAACACAGTTGCGGTGATGACTGAGGGGGAAATGTCCTGGATCAAGGATAGCAAAACCAAGATGTGGAAGATTGCCAAACCAGAGGAGTTGCAGAAGATGGCAGAGGTCTTTGAGGCTTCTTCTCATGGGGCCATGTCAGGTGGTGCAAAGTTTGGTGTGGCCCTGGGGGTCACCCTGGCGGTAGCTCTGGTAGTTGGCTTGATTGCACACATGATAAGGAGGAAGTGGAGGAGGGGTAGTGGGTATGATGAGATTCAGAGCGAGGAGGTTCAGGAAGAGCCAGTACCAGACAGAACAGCGGAGACAGAAATGGAGGGAGGTTCATCTCAAGCACTGCTGGCTTAAGAGTCGCAATGGACAAGGGTTCCCAGCCACatcacaaaatattaatttgtgtgtttgggTCAGCTTCAATTTGCTATAGGcatttaatggaaataatatgCACATTATATACTATGaacaattaattacaattgCACAAGCTTAGGGACAATAGTTAAATTTCTTGTAAATTGTTTGGATTTGGAATATATCACAATTTGTggtttcaaaatattaattctGGGCTGTGAAAAAGATAGGTATGGTCAGGTGACCAATGATGTTAAAAATGCAGCAAAGTCAGTATTAATGTCCATAAACACCAGGGTTTATTGAAATGGTGAATGAACTGGCCACCAAGAAGCTGTCAGCCTACAAACTTCCATAAATTGTCAATGGTAATGAAATTggtgtttaaataaaagttatagAAGATGTGCATTCCTTAGTAATCAGTTGATACAACAGGATATAATTAGTGGTTTTACGGGTTTTACATGATTTAACCCAATTTCTACACCCTGAATATTTTCAGGTTAATCCCCAAAACTCCAAGAATCTTTGAAAGCTGTCAGTTAATACACGTTATGAACACATTGACGATTCAAATGCAGGAGGAGACATGTAGCCGATTTAACCCGATGTATACATCCTGAATGGTTATTTTGGCATTGCAGTTAAACCTGAAAATTGCGGTCTGCTTCAAATTCCAGGGAAGAATATGACAATGCTGATGGTAAACTGAATAACCagtttaccaaaataaaaaaatataaaaaattgaagatttaatgattaatgaagGAATTCCAATTaagaaaatgtctgtaaataGTGATCTATAACCAAGTGTAGCTTTTTCAAATATAAGTAAGTTACTGGCATACATAATGTTGTGACAGTTGGAACATCACAAGGTTAATGTAATGCTATGAGAATATCTGTGATTTTATGTTACTATGTTAAAGTTTGACATGATGAATGGTaagatgtattttacattactaaTATTATATTCACCTGCACAACTACATAGCTGCAAATAAAATTGAACTAacaactgattttgttttgaatattttttcagtgtgtgtgttcattcaTAAGACAATACGTTAACTCAACAAAATAAgatttatataatacagtaataaaacagTAATCATACAagcaaaagaaatacaaacatttaacattaaaataccatgccaaaaaaataaaagcaataccaGTGCATTAACACTAGTACAGGTAAGAGTGTTGTAGGTTTTCAGTTACAGAAACAATTGCCATGAAGCTTTGTTACAacttattatacttattatatGTGTGCCCTTACAAACTAAATCTGATTGTTGATATtagaaattaatgtaaaacacaatgaaCATGTGGA

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015574 True 4033 mRNA 0.43 2 12938665 12944741

Neighbor

gene id symbol gene type direction distance location
AMCG00015569 NA coding downstream 157694 12780747 ~ 12780971 (-)
AMCG00015570 NA coding downstream 158172 12779938 ~ 12780493 (-)
AMCG00015568 NA coding downstream 158751 12763912 ~ 12779914 (-)
AMCG00015561 NA coding downstream 297997 12623258 ~ 12640668 (-)
AMCG00015562 NA coding downstream 364613 12573463 ~ 12574052 (-)
AMCG00015575 NA coding upstream 23139 12967880 ~ 12982396 (-)
AMCG00015577 tmem17,LOC107753710,LOC107598907 coding upstream 87300 13032041 ~ 13036515 (-)
AMCG00015578 NA coding upstream 94807 13039548 ~ 13055038 (-)
AMCG00015579 NA coding upstream 127766 13072507 ~ 13077755 (-)
AMCG00015582 NA coding upstream 153897 13098638 ~ 13108454 (-)
G98671 NA non-coding downstream 414590 12523793 ~ 12524075 (-)
G98662 NA non-coding downstream 468225 12470098 ~ 12470440 (-)
G98658 NA non-coding downstream 480592 12457626 ~ 12458073 (-)
G98657 pcnx3,LOC108279110 non-coding downstream 482459 12455930 ~ 12456206 (-)
G98656 pcnx3,LOC106602984,LOC107715400 non-coding downstream 483810 12454625 ~ 12454855 (-)
G98836 NA non-coding upstream 304095 13248836 ~ 13249283 (-)
G98844 NA non-coding upstream 316270 13261011 ~ 13262227 (-)
G98953 NA non-coding upstream 385151 13329892 ~ 13335929 (-)
G98950 NA non-coding upstream 451906 13396647 ~ 13416500 (-)
G98973 NA non-coding upstream 520117 13464858 ~ 13519520 (-)
AMCG00015557 map3k11,LOC101463885,LOC102206973,LOC102778058,LOC100707946 other downstream 508017 12399733 ~ 12430648 (-)
G98546 NA other downstream 1522003 11414367 ~ 11416662 (-)
G98543 NA other downstream 1552466 11353783 ~ 11386199 (-)
AMCG00015540 NA other downstream 1593175 11332663 ~ 11345490 (-)
AMCG00015535 NA other downstream 1677497 11185860 ~ 11261168 (-)
AMCG00015598 timm10,LOC107746912,LOC107674252,LOC107556822 other upstream 513386 13458127 ~ 13468822 (-)
AMCG00015606 NA other upstream 726574 13671315 ~ 13845677 (-)
AMCG00015612 zdhhc5a,zdhhc5 other upstream 889776 13834517 ~ 13864738 (-)
AMCG00015628 NA other upstream 1350227 14294968 ~ 14336329 (-)
G99213 NA other upstream 1502970 14447711 ~ 14456695 (-)

Expression


Co-expression Network