AMCG00015575


Basic Information

Item Value
gene id AMCG00015575
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 12967880 ~ 12982396 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015575
AGGGCTCTTTTGAAGAAGTGGGATCCTGGGAAAAAACATATCCAGAGACAGTggtatgaaaaaagaaaacctttctTGAGAATTGATTAAACTTAAGCAGACCTTCTCCAATCAACCAGACAACTAAACTGCTTActgatacaaaaaaacaaataaatcagccCAGAAGCAAATATAGTCATGGCCATATCTTCAGAACTCgagttctctctctcccttcctgcAGTGAGTGCACCccatggcatctgtcagtgccaaccagacacacacaattcagCACAGGACTGACTGGATCATACCTGTATAGGTGGAAGctcttatatatttaatcagtttatttctttatttttgtgcaaaTTAGTAATTTTTGGTAAATATTCCCTTCTCATTTGACCTGCTGTAGGTATTGCCCCTGCGTTTATTACATGTTTGTTGAAAAATTCACGTAGCTTGGGGTGATCAAGTTTTTCCAGAGGAATATCCGCACAGACAAATGCCTCTGTCAAGTCATATATAACAGCATGTCGGCGTTCATAACTTTCTTTCCCCCTGCGTTTTAAGCTGGAGAGCAATGCCTCATCACCATCAATCTTAGCCTTTCGCTTTACATGCTTTTGTGATGTTAAATGTCTGTCTATTGCTAGCTTTCGCTTATGGCTCAATGGTTTATTGCAGGTAGTGCATAATATCTTACTCCCATCAGTTTGCAGTACACCAGGTGGGTATTGCTGCACATACTCGTCCAACTGCACTGTTCTTCTGTCGACGGGCGGCTTCTCTTTTGATGTTTGCAGGTGATGGTGAAGCTTTCCTAAGAAGGAGGAAGGCTTGCCACAGGCGTCGCCAGGCACTATGGGTTCTTTCAAGCCACATTTGATGCCCTTTCCATCCTCACCTCCCTGacatgttaccccactcttcatTTCGAACTGTGTTACTGATTCCTCCACTTTAATATATGCCAGTTCCACTCCTTCCTCAACAACGACACATACTTCTTCATATTCTTCCTGTTTCACTAAGGAAGCATCAATCTGTAGTGCAGAATTAAAATGACCAGACTGTGGTTCACACAACTCCTTCTTAATGGGAACATGTTCCGTTTCATGTGAATCCACTTCCTGTTTAATCTGGATAGGCTCTGGTTCAGGCGAATCGATTTCCTGTTTGATGTGACCATACTCTAGTTCAGGTGAATCCACTTCCTGTTTAATGTGGACAGACTCCAATGGAGAAGAATAGCAACTATATatcATGGAGTTGACAGAAACTACAGCTGAAGGACCTGGGGAGCCACAGGCCActgtggtgggggggcacaAGCCACTGCATCGTTTCCTGAAGGGAGAGCCAACAAGTGTGGGGattgctgtgctgtttctgGGATGTGGACAATTCATTTTTGGCATAGCAATGAAAAACTATGATATGTATGTCACTACTTTCACCTACATCCCATTCTGGATAGGACTGATGtatatAGCTTCAGGCCTGCTCTGCATCTTCTGTGAGAAAAAACCCTCCAAAACAATGCGACCGCTATACTTCATGAAGTCTGTGATGTTGGCTCACAGTGTGGTAGGTGTAATTCTTCTCATGGTGATGTGTGGCTTCGCCGCTGCTGCTCTACGCTCCTCCAGGACACAGGCTGTCATCATAATGCGTAATTTACCTTCAGAATAGaagatacacatttaaaaaaacactttctaccTTTTActctttctgtctttcctaTTGCTTAGTGTAATAAGTGTAATGATCTGAttgcaaattgttttttaaatattaatattaaatatattggtATTAGTATttagtgaaaaacaaagaattgCTCTATAACATACACAAAGATAAaaggaataataacaaaatcccttaataacaaaacaagataTTGTAAGACATGAGAGAGAGGACAATGAAACATCTCTCTGTTACTAACAATAACCCACCCTATATGATATATAGATGATGGAGGAATAAAAGAAGCTATATGAAACACATAACTAAAATGAATGTACACAgatatgtatttcttttgtatCAAATCACACCATCTGTTTGTATTATCTAGGCCTATTGAATAAATGTAC

Function

GO:

id name namespace
GO:0009074 aromatic amino acid family catabolic process biological_process
GO:1901605 alpha-amino acid metabolic process biological_process
GO:1901606 alpha-amino acid catabolic process biological_process
GO:0006520 cellular amino acid metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015575 True 2099 mRNA 0.40 7 12967880 12982396

Neighbor

gene id symbol gene type direction distance location
AMCG00015574 NA coding downstream 23139 12938665 ~ 12944741 (-)
AMCG00015569 NA coding downstream 186909 12780747 ~ 12780971 (-)
AMCG00015570 NA coding downstream 187387 12779938 ~ 12780493 (-)
AMCG00015568 NA coding downstream 187966 12763912 ~ 12779914 (-)
AMCG00015561 NA coding downstream 327212 12623258 ~ 12640668 (-)
AMCG00015577 tmem17,LOC107753710,LOC107598907 coding upstream 49645 13032041 ~ 13036515 (-)
AMCG00015578 NA coding upstream 57152 13039548 ~ 13055038 (-)
AMCG00015579 NA coding upstream 90111 13072507 ~ 13077755 (-)
AMCG00015582 NA coding upstream 116242 13098638 ~ 13108454 (-)
AMCG00015586 NA coding upstream 199442 13181838 ~ 13193481 (-)
G98671 NA non-coding downstream 443805 12523793 ~ 12524075 (-)
G98662 NA non-coding downstream 497440 12470098 ~ 12470440 (-)
G98658 NA non-coding downstream 509807 12457626 ~ 12458073 (-)
G98657 pcnx3,LOC108279110 non-coding downstream 511674 12455930 ~ 12456206 (-)
G98656 pcnx3,LOC106602984,LOC107715400 non-coding downstream 513025 12454625 ~ 12454855 (-)
G98836 NA non-coding upstream 266440 13248836 ~ 13249283 (-)
G98844 NA non-coding upstream 278615 13261011 ~ 13262227 (-)
G98953 NA non-coding upstream 347496 13329892 ~ 13335929 (-)
G98950 NA non-coding upstream 414251 13396647 ~ 13416500 (-)
G98973 NA non-coding upstream 482462 13464858 ~ 13519520 (-)
AMCG00015557 map3k11,LOC101463885,LOC102206973,LOC102778058,LOC100707946 other downstream 537232 12399733 ~ 12430648 (-)
G98546 NA other downstream 1551218 11414367 ~ 11416662 (-)
G98543 NA other downstream 1581681 11353783 ~ 11386199 (-)
AMCG00015540 NA other downstream 1622390 11332663 ~ 11345490 (-)
AMCG00015535 NA other downstream 1706712 11185860 ~ 11261168 (-)
AMCG00015598 timm10,LOC107746912,LOC107674252,LOC107556822 other upstream 475731 13458127 ~ 13468822 (-)
AMCG00015606 NA other upstream 688919 13671315 ~ 13845677 (-)
AMCG00015612 zdhhc5a,zdhhc5 other upstream 852121 13834517 ~ 13864738 (-)
AMCG00015628 NA other upstream 1312572 14294968 ~ 14336329 (-)
G99213 NA other upstream 1465315 14447711 ~ 14456695 (-)

Expression


Co-expression Network