AMCG00015577 (tmem17,LOC107753710,LOC107598907)


Basic Information

Item Value
gene id AMCG00015577
gene name tmem17,LOC107753710,LOC107598907
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13032041 ~ 13036515 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015577
GTGCACAGTTCTGGTTGGCCGGGGAAGCGACGGTTGCCCTGACAACACTGTAGTGCGCGTGAATGGAAACTGCGTTTACCTCAGTCGGCCATTTTGGATCTCGATTCCCCTTAGCGAGACAGTAGCACTCCGCCCCGACTGGAGAGCCACACTGGCCTCTACTGTGTGACTGTTGGGCGGCCTGGCTGCAGCATGTCGCTGCCGGAGCCCGTGCGGAGGCGCCTGGATGATTTCTCTCGGACTGTCTTCACCGAGCAGAACCGGACCCGCCCGCTGTGCGACGAGCAGCCCGCTGCCCCACACGacactgAGGTCGTGTCCAGCCTTCCTCTGCAGATGTCTCTGTTCTTCAATATGTGGTTCTTCCCTCTTTGGTGGGTCTGCGAGGTTGTCATGCTGCATCTCAAGTATCCAGTGCTGCCTGATTACTACAAGTTCATTCTCATCACCATTCTCATAATAATGACTCTGATTGAAGCAATTAGACTCTATTTGGGCTACACTGGCAATCTGCAGGAAAAGGTCCCGGAGCTGGCCGGGTTCTGGCTGCTCAGTCTGCTGCTGCAGTTCCCTCTGATCTTGTTCCAGCTCTTCAATGAGGCCATTCTGATTCAGCCGCTGGAAAGAGGAGCCCATATAGTGCTGTCACTCTTTATACTGACGCAGGTTCTCTCGGGGTTCATCGCTCTACGCTCGATGGTCAGACACAGCGAGAACCGCTTCCACCTTCGTCAGTTCAACGGCATACAAGAGCTTCGagcctgactgacacaccaACTGACTGGTACACTAACATGAAGTGACTCAGTGGCTGACAGATAAGCTGAATCACAAACTGACAGATGGACTGGAtctgacaaacacaaaatgactgAATTGCTGACATATTGATAGACAAACTCACTGACGCACTGAATGACTGACAATCACAAGCTGACTGATAGACCTAAACTAACAGACTCTGTCCTATAAAACCATCAGACTGACAAACTTACAGAAACTGAGTGAGAAAACAGAGAAACCTGATCACAAAATGAGTGAGGTACACTTCCTGACTGGCAGACTAAAAATTACATATTGACCCGTATGACACAGACTGACATGCAGAGTAAAAGGGCAGAAGGAATCAGTCAGTGGATGGGAGGCAAGACTGAGATTCACAGCATGAAACGGAAGCACCCAAACTTGCAGGTGCCCTATTTTGGCTCTGCACTTTTGTACTATATTGTCCATATAGGATTCttatgttttgtactttttctgCTGAAGGTTTATAAAATCATTTGTAACCACcttgtatataaattaaatctgtatatattttaaaacca

Function

symbol description
tmem17 Predicted to be involved in non-motile cilium assembly and smoothened signaling pathway. Predicted to act upstream of or within cell projection organization. Predicted to be located in ciliary membrane. Predicted to be part of MKS complex. Predicted to be active in ciliary transition zone. Is expressed in habenula; hatching gland; polster; and telencephalon. Orthologous to human TMEM17 (transmembrane protein 17).

NR:

description
PREDICTED: transmembrane protein 17

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process
GO:0036038 MKS complex cellular_component
GO:0060170 ciliary membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19384 TMEM17; transmembrane protein 17

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015577 True 1331 mRNA 0.48 5 13032041 13036515

Neighbor

gene id symbol gene type direction distance location
AMCG00015575 NA coding downstream 49645 12967880 ~ 12982396 (-)
AMCG00015574 NA coding downstream 87300 12938665 ~ 12944741 (-)
AMCG00015569 NA coding downstream 251070 12780747 ~ 12780971 (-)
AMCG00015570 NA coding downstream 251548 12779938 ~ 12780493 (-)
AMCG00015568 NA coding downstream 252127 12763912 ~ 12779914 (-)
AMCG00015578 NA coding upstream 3033 13039548 ~ 13055038 (-)
AMCG00015579 NA coding upstream 35992 13072507 ~ 13077755 (-)
AMCG00015582 NA coding upstream 62123 13098638 ~ 13108454 (-)
AMCG00015586 NA coding upstream 145323 13181838 ~ 13193481 (-)
AMCG00015589 NA coding upstream 248955 13285470 ~ 13311221 (-)
G98671 NA non-coding downstream 507966 12523793 ~ 12524075 (-)
G98662 NA non-coding downstream 561601 12470098 ~ 12470440 (-)
G98658 NA non-coding downstream 573968 12457626 ~ 12458073 (-)
G98657 pcnx3,LOC108279110 non-coding downstream 575835 12455930 ~ 12456206 (-)
G98656 pcnx3,LOC106602984,LOC107715400 non-coding downstream 577186 12454625 ~ 12454855 (-)
G98836 NA non-coding upstream 212321 13248836 ~ 13249283 (-)
G98844 NA non-coding upstream 224496 13261011 ~ 13262227 (-)
G98953 NA non-coding upstream 293377 13329892 ~ 13335929 (-)
G98950 NA non-coding upstream 360132 13396647 ~ 13416500 (-)
G98973 NA non-coding upstream 428343 13464858 ~ 13519520 (-)
AMCG00015557 map3k11,LOC101463885,LOC102206973,LOC102778058,LOC100707946 other downstream 601393 12399733 ~ 12430648 (-)
G98546 NA other downstream 1615379 11414367 ~ 11416662 (-)
G98543 NA other downstream 1645842 11353783 ~ 11386199 (-)
AMCG00015540 NA other downstream 1686551 11332663 ~ 11345490 (-)
AMCG00015535 NA other downstream 1770873 11185860 ~ 11261168 (-)
AMCG00015598 timm10,LOC107746912,LOC107674252,LOC107556822 other upstream 421612 13458127 ~ 13468822 (-)
AMCG00015606 NA other upstream 634800 13671315 ~ 13845677 (-)
AMCG00015612 zdhhc5a,zdhhc5 other upstream 798002 13834517 ~ 13864738 (-)
AMCG00015628 NA other upstream 1258453 14294968 ~ 14336329 (-)
G99213 NA other upstream 1411196 14447711 ~ 14456695 (-)

Expression


Co-expression Network