AMCG00015578


Basic Information

Item Value
gene id AMCG00015578
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13039548 ~ 13055038 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015578
ATGGCGCGTGTAGTGTTTAACGCAGTGCATCACGGGTGGATCACGATGTCGGACTCTTCGGTGATGTTCCAAGCCCAGCTCTCCTCCGTCATGGAGATTCTCTTCAAAGCAGCCGTGTATGAGATCACCAAGGTGGTGGAGGGCAGTTTTTCTCACTTCCGTGTGGAGATCGCCAAGGTCAAGAAAGAGAACGAGAGCCTGAGGCTGAGGTTGCAGATGTGGGAGACCATGTCTACAGCAGAGCAGAGCTATGGGATCAGTCACATGGGGAAAACAGCACCTTCTGTAACCAGCATCGGAGTGCAGGTGTGTGAGGAGCACACCAGGAAAGAGTTGGGTGCCGGAATGAAGAGGAAACATATGTCAGTTGTGACGCACGAGTTTAGCAATCTTTGGGAAGCCAAGGAGCCCAGACCAGCAGGGTATAAGGTGGAAGCTACAGACTCATGTCCTGTACCTGAGCTTCAGTCTGTTGTCATTAAAGAAGAGATCAAAGAGGAGAGGTCTGAAGTAGACTTGGCCAGGAGAGACCCACAGGAAGTCCTGATGATGAGAAGTGGTTTATCAGACGAAGACAACATCCATTTTTTAAGTTCCGTCGGCCCCAGGGCTCCCGAGGAGGTAATGAAGGAGCTGCGGGATGAGCTGAAGACTCTGAAGCTCCAAGTGCGCAAGCTGACTgaggagcaggagcagaagCAGAAACATGTGCAGGCCCCTGGACAAGAGGACACCTGCAATGGGCTGAAGCTCTCCAGTCTTCGGTCAGCTGTAGCCCATCTATCAGATGATGCTGTCCAGGAGGTCATGAAGATACTGGTGTTGAAGGTGTTCAAACGCGAGGAGTTGCATTGTTGTTCTGTGACTGGGAAGAGGTCTGTGAAATCGGGAGAGAACCCCCGGCCACCCCTGCACCCTGAACGTCTAGACTGGCTGGAAGCCCTTGTGAGGGAGAAGTGTCCATCGGTCACACACAAGATTTTTGTTGAGAAGCTGCAGAACATTCAGAAGGTGCTGAGAAGGGTGCATCACAATGCCGAGTCCAAAAAGAATGCAACCAAAGTGCACGGGCGTGGAGGCCAGTGTTCTTCCTGATGCTGAGGAAAAGACTCAcattgagcagcagcagccctgtgAAAAGGAGCAGGGCTCCTCCTGGCAGGAGACAGAGCCCACAGACGAGATGCACAGGAGCAGAGAGGGAATGGAGGAGCTCTGTGGACTGGAGCCTGTGTGCATATCAGTGACAGGACTTACACATGAGGCACCATGGCTCAATAGAAAGCAGCCTAACCACAATGAATCAACGCCATATacctgcacccagtgtgggaagtaTTTCAGCAGGCCTGGCCACTTAAAATCACAccagcacattcacacaggagagagaccatactCCTGCAGTCaatgtgggaagagcttcagctACTCGGGTGACCTCAAAACCCACCAACGCATCCACACGGGAGAGAGGCCCTACTGTTGCCCACAGTGCGGAAAGAGTTTCAGCCGACTGGGCATCCTGAAGCAGCACAGGAAGATTCACACAGGGGAGCGACCACACTGCTGCTCACAGTGCGGGAAGTGCTTCAGCCACCTCAGCAACCTGAGACGGCATCATCGCATTCACAACAATGAAGTTGTGGAACTGCAACTGTTCTGAGAGAAGAATGGGATGGGGGGGGAGGttctatttaaaaattaagGAATGTaaggaaatataaatgtaaaaaaagttcAGCAGATTCAAATACTTTATCTTACATTGCCCTATTTAACAAAAGATAAGGGTGTGGAGCACAATGCCAATGGGGAAACTCCACCCCCTTAAACTtaaagctctggaaaaaattaagagaccactccaagttcagaaatcaatgttaagtggtttcttatttttttccagagctgtatttttcttaaatacagTTTAGAGTATTCTAAGTTTCCTTTAATTATCTGTATTGTGTGGTATATTTTGGTATTGATACAACAGTGGTTTTGACTAGTTATTGCTTTAGTGTGTATGCATAACTATACTGTGAAAAGCGAACTTcaaattttatttcaatttgagGGTACATAACAAGGtataattgaaaaagaaagttCATGTATATTTCTTCCCATAAAAGTCCATGGtatcttgtatttattatagcTACTGGTAGATATTAGTATTGTGAAAGGTCTTACtcttattttatatgtattggaAGTAATTGactattaatttaaagtgtatggtaacacacacaaaattgcACTTGTTGATGTTATTCAATAAAGGATTATGCCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015578 True 2306 mRNA 0.47 7 13039548 13055038

Neighbor

gene id symbol gene type direction distance location
AMCG00015577 tmem17,LOC107753710,LOC107598907 coding downstream 3033 13032041 ~ 13036515 (-)
AMCG00015575 NA coding downstream 57152 12967880 ~ 12982396 (-)
AMCG00015574 NA coding downstream 94807 12938665 ~ 12944741 (-)
AMCG00015569 NA coding downstream 258577 12780747 ~ 12780971 (-)
AMCG00015570 NA coding downstream 259055 12779938 ~ 12780493 (-)
AMCG00015579 NA coding upstream 17469 13072507 ~ 13077755 (-)
AMCG00015582 NA coding upstream 43600 13098638 ~ 13108454 (-)
AMCG00015586 NA coding upstream 126800 13181838 ~ 13193481 (-)
AMCG00015589 NA coding upstream 230432 13285470 ~ 13311221 (-)
AMCG00015594 NA coding upstream 306386 13361424 ~ 13364977 (-)
G98671 NA non-coding downstream 515473 12523793 ~ 12524075 (-)
G98662 NA non-coding downstream 569108 12470098 ~ 12470440 (-)
G98658 NA non-coding downstream 581475 12457626 ~ 12458073 (-)
G98657 pcnx3,LOC108279110 non-coding downstream 583342 12455930 ~ 12456206 (-)
G98656 pcnx3,LOC106602984,LOC107715400 non-coding downstream 584693 12454625 ~ 12454855 (-)
G98836 NA non-coding upstream 193798 13248836 ~ 13249283 (-)
G98844 NA non-coding upstream 205973 13261011 ~ 13262227 (-)
G98953 NA non-coding upstream 274854 13329892 ~ 13335929 (-)
G98950 NA non-coding upstream 341609 13396647 ~ 13416500 (-)
G98973 NA non-coding upstream 409820 13464858 ~ 13519520 (-)
AMCG00015557 map3k11,LOC101463885,LOC102206973,LOC102778058,LOC100707946 other downstream 608900 12399733 ~ 12430648 (-)
G98546 NA other downstream 1622886 11414367 ~ 11416662 (-)
G98543 NA other downstream 1653349 11353783 ~ 11386199 (-)
AMCG00015540 NA other downstream 1694058 11332663 ~ 11345490 (-)
AMCG00015535 NA other downstream 1778380 11185860 ~ 11261168 (-)
AMCG00015598 timm10,LOC107746912,LOC107674252,LOC107556822 other upstream 403089 13458127 ~ 13468822 (-)
AMCG00015606 NA other upstream 616277 13671315 ~ 13845677 (-)
AMCG00015612 zdhhc5a,zdhhc5 other upstream 779479 13834517 ~ 13864738 (-)
AMCG00015628 NA other upstream 1239930 14294968 ~ 14336329 (-)
G99213 NA other upstream 1392673 14447711 ~ 14456695 (-)

Expression


Co-expression Network