AMCG00015579


Basic Information

Item Value
gene id AMCG00015579
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13072507 ~ 13077755 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015579
GGATGCAAGCGGAAGCAGGACCCGGAGACACAGCCGacttccttgttttgttttctttatgtgaTATCTCTCGTCTCCAATCGTTTtcgttttttaataaagcaatgcCAAAATTAAGGTGATTTGATGCAGTCATttaatgcattgtgtttttgttacgTTTGTAATGGTTGACATGCGCCCGGGCCCGTCCTGAGAGGATCCGTAACTGGATGCAAAGACGCTTTAAATCTCAGTTTCCTTGTTTCACATCGAAATCAAGCCGCGTAACTGCTGTCTATTCTGCACTGCCGTTGACATAAACTGATGTGACTACCCAGGCAACAGTGAAACCTACAACTAGCACACTTGGTGGGACCCACATCTCTGAAGCTGACGGCAGTATGTCGGATTCTGTGGCCTCTTTCCAATCACAGCTCTCCTCCATCCTGGAGATCCTCGTCAGAGCGGCAGTGTGCGAGGCGACCAAGCTGTTCGAGGGCAGTTGTGCCAATTTGCAGGTGGAAATCGCCCAGAGCAAGAAAGAAATCGAAAGCCTGAAGCTGAGGTTGCAGCTGTCAGAGAGCGAGCTGAGAGCAGAGCGGGACTATGGGGTAAGCATTGTGGGGAAGACGGCGCTTGCTTTAAACAGCCGCTGTGTTGGAGTGCAGGCTTCTGCTGAGATGGTACAGATAAAACGAAGAGGAACAGGAGATGGAGCCAAGGACAAAAGTGTGTCAATCATAGAGCAAGTCTTTGACAAGGACTGGTGCAGCAGTCTATGGAGAGCAGAGGACCCGACTTCTATTGACATAGTAGAGGAAGAGACCGAACATTATGCCGTTGGCTTCGCAGAGGATGATGCTGAGATGGAAACAGTCGTCATTAAAGAAGAGTCTACAGACACAGAGGAGGACAGCCCAGCATCACTACTTACTGTAAAGGAGAGAGCTGAAGAGAAGTTGGCCAGCAGAGAACTACAGGGAAGACTAGCTAGCCTGAGGAAGGAGGAAGTGGCAGCAGTGGCACAGTCCTTGTGCTTAAAGGAGGACGGGGCTGAGTTCGCTGAGGTTGCTCCCGGACAATATGGGATGGAAACGGACAATGGGCAACAGCCAAGACCCAGTGGAGCAGAAAGCTTAGAATTTCAGGATCCCACCAGTGCCATGGAACCCGAGCCCACCAACGAGGAG

Function

GO:

id name namespace
GO:0051301 cell division biological_process

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015579 True 1172 mRNA 0.50 5 13072507 13077755

Neighbor

gene id symbol gene type direction distance location
AMCG00015578 NA coding downstream 17469 13039548 ~ 13055038 (-)
AMCG00015577 tmem17,LOC107753710,LOC107598907 coding downstream 35992 13032041 ~ 13036515 (-)
AMCG00015575 NA coding downstream 90111 12967880 ~ 12982396 (-)
AMCG00015574 NA coding downstream 127766 12938665 ~ 12944741 (-)
AMCG00015569 NA coding downstream 291536 12780747 ~ 12780971 (-)
AMCG00015582 NA coding upstream 20883 13098638 ~ 13108454 (-)
AMCG00015586 NA coding upstream 104083 13181838 ~ 13193481 (-)
AMCG00015589 NA coding upstream 207715 13285470 ~ 13311221 (-)
AMCG00015594 NA coding upstream 283669 13361424 ~ 13364977 (-)
AMCG00015596 NA coding upstream 291648 13369403 ~ 13409708 (-)
G98671 NA non-coding downstream 548432 12523793 ~ 12524075 (-)
G98662 NA non-coding downstream 602067 12470098 ~ 12470440 (-)
G98658 NA non-coding downstream 614434 12457626 ~ 12458073 (-)
G98657 pcnx3,LOC108279110 non-coding downstream 616301 12455930 ~ 12456206 (-)
G98656 pcnx3,LOC106602984,LOC107715400 non-coding downstream 617652 12454625 ~ 12454855 (-)
G98836 NA non-coding upstream 171081 13248836 ~ 13249283 (-)
G98844 NA non-coding upstream 183256 13261011 ~ 13262227 (-)
G98953 NA non-coding upstream 252137 13329892 ~ 13335929 (-)
G98950 NA non-coding upstream 318892 13396647 ~ 13416500 (-)
G98973 NA non-coding upstream 387103 13464858 ~ 13519520 (-)
AMCG00015557 map3k11,LOC101463885,LOC102206973,LOC102778058,LOC100707946 other downstream 641859 12399733 ~ 12430648 (-)
G98546 NA other downstream 1655845 11414367 ~ 11416662 (-)
G98543 NA other downstream 1686308 11353783 ~ 11386199 (-)
AMCG00015540 NA other downstream 1727017 11332663 ~ 11345490 (-)
AMCG00015535 NA other downstream 1811339 11185860 ~ 11261168 (-)
AMCG00015598 timm10,LOC107746912,LOC107674252,LOC107556822 other upstream 380372 13458127 ~ 13468822 (-)
AMCG00015606 NA other upstream 593560 13671315 ~ 13845677 (-)
AMCG00015612 zdhhc5a,zdhhc5 other upstream 756762 13834517 ~ 13864738 (-)
AMCG00015628 NA other upstream 1217213 14294968 ~ 14336329 (-)
G99213 NA other upstream 1369956 14447711 ~ 14456695 (-)

Expression


Co-expression Network