AMCG00015582


Basic Information

Item Value
gene id AMCG00015582
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13098638 ~ 13108454 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015582
CGGCGCAGCGTGGGTCGCAGCTTTGCATTTCCACAGTGAGCAGACTTCCTCGTTTATTGCTGAGGTTATGAGGCTAGATTTTGGCAAAGACACTCCATTTTGAGTCATGGACGTTCAGTAAGGTGCCAAGGTTTGGAATTGCATAGCAGAAAGACTGTACGCTAGACAATGCTgggtggaaaaaataatttttcCCATTAATAGTCATCAAAGTTCAACTCGTAACAATGTGCATagagcaaatacaaattaaaaaacaagtacCAGAATACATGGTATAGCATATATTAAAGAGTTATAAAAATTATCTTTTAACACATATGTACATTATAAGGCAGGAGTTGAAAATGCCTCACAGAACCATAGTTCTTTTGGATGGGAGTTCCCCTGTTTTAGGGCCATAAGAAGAAATCGCCCTGAAGAACTGCATGTCTTTCCCTGTcttgtctgtgtaaacaaggtctgTGCAGCTGCTCACAATTTAGAtcctttttcttaaaaatgtatctccTGGATTTCTTTGACTCTTCAGCCCTATCACACATAGTCATGTAGaggaaaaaacataacattttgaagTGTGACGGGATACTCAGACCAATACTGTTTGACACTTTAAAAGTCAGTGAAAGGATTTAAGCTGAAGCAAGACATGGAGAGTATGTCTGAATCCGGCAGTGCTACATTGGATTATTCCACAGTGACATTCCAATCCCAGCTCACCTCCATCATGGAGATTCTAGTGAGATCAGCGGTGTCTGACATCAGTAAGCTTGTGGAAGGCAACGTGACAGGTCTCCAGGCTGAAGTGGCCCAGAGCAAGAGGGAGAATGAAAGCTTGAGCTGGAGACTGTGGTTGTATGAGAGCCAGACAAAGGAGCAGCAAGGGGCCGGGGCGACTGGCACGGGCAGGGTGGTACCCCCTCAGAACAGCCGCAGCATCGGTGTGCAGGTGGACAAAGAGAACACTGTGGTGGAGCCCAGAGGAGCGGCAGGTGggacaagggagagagagactcctGTCACTGAGACTGAGAACCCACTGGAAGAAGGATGGTGCAGCAGCCTATGGAAAGCTAAGGAGCCAACTTCTGTGAACATCGAAGTAGAGGTCACCGAGCTATACCCTGTCCACTTTGCAGAGGAGGCCACAGAACCAGTGTCTGTCACCATTAAGCAGGAGGGATGGCGTCTGGAGAGTGGAGAGCAACGGCATGGACAGAGGCTTGAGAAGACTTCGCAGCGGGAGATGGTGAAAACGCTGAGATCCTACACTGTTACAGTGGAGAGCTCCTCATTGCAGGCAAGACAGACGAAGCAACAACAACTTCAGCAGAAGcagcagaaaacaaagaagcagcaacagcagcagcaatccCTGCCCTCCAGCACAATACCCCCAGCCCCTGCGAATGAGCATGCCATAGACAGTGAT

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015582 True 1435 mRNA 0.47 4 13098638 13108454

Neighbor

gene id symbol gene type direction distance location
AMCG00015579 NA coding downstream 20883 13072507 ~ 13077755 (-)
AMCG00015578 NA coding downstream 43600 13039548 ~ 13055038 (-)
AMCG00015577 tmem17,LOC107753710,LOC107598907 coding downstream 62123 13032041 ~ 13036515 (-)
AMCG00015575 NA coding downstream 116242 12967880 ~ 12982396 (-)
AMCG00015574 NA coding downstream 153897 12938665 ~ 12944741 (-)
AMCG00015586 NA coding upstream 73384 13181838 ~ 13193481 (-)
AMCG00015589 NA coding upstream 177016 13285470 ~ 13311221 (-)
AMCG00015594 NA coding upstream 252970 13361424 ~ 13364977 (-)
AMCG00015596 NA coding upstream 260949 13369403 ~ 13409708 (-)
AMCG00015593 LOC108268441,LOC105020884,LOC101159514,LOC107676536,LOC107741212,LOC105028768 coding upstream 316015 13424469 ~ 13424876 (-)
G98671 NA non-coding downstream 574563 12523793 ~ 12524075 (-)
G98662 NA non-coding downstream 628198 12470098 ~ 12470440 (-)
G98658 NA non-coding downstream 640565 12457626 ~ 12458073 (-)
G98657 pcnx3,LOC108279110 non-coding downstream 642432 12455930 ~ 12456206 (-)
G98656 pcnx3,LOC106602984,LOC107715400 non-coding downstream 643783 12454625 ~ 12454855 (-)
G98836 NA non-coding upstream 140382 13248836 ~ 13249283 (-)
G98844 NA non-coding upstream 152557 13261011 ~ 13262227 (-)
G98953 NA non-coding upstream 221438 13329892 ~ 13335929 (-)
G98950 NA non-coding upstream 288193 13396647 ~ 13416500 (-)
G98973 NA non-coding upstream 356404 13464858 ~ 13519520 (-)
AMCG00015557 map3k11,LOC101463885,LOC102206973,LOC102778058,LOC100707946 other downstream 667990 12399733 ~ 12430648 (-)
G98546 NA other downstream 1681976 11414367 ~ 11416662 (-)
G98543 NA other downstream 1712439 11353783 ~ 11386199 (-)
AMCG00015540 NA other downstream 1753148 11332663 ~ 11345490 (-)
AMCG00015535 NA other downstream 1837470 11185860 ~ 11261168 (-)
AMCG00015598 timm10,LOC107746912,LOC107674252,LOC107556822 other upstream 349673 13458127 ~ 13468822 (-)
AMCG00015606 NA other upstream 562861 13671315 ~ 13845677 (-)
AMCG00015612 zdhhc5a,zdhhc5 other upstream 726063 13834517 ~ 13864738 (-)
AMCG00015628 NA other upstream 1186514 14294968 ~ 14336329 (-)
G99213 NA other upstream 1339257 14447711 ~ 14456695 (-)

Expression


Co-expression Network