AMCG00015589


Basic Information

Item Value
gene id AMCG00015589
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13285470 ~ 13311221 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015589
GCTAAGAAATCAAATGAGGATACTCTCTCCGTTCTGAAGAAACACAGGAAGAATGAGCTGGCCCAACGCAAGAAGGAGTACAAGAAGGTGGAGATGTGTTTTGAAGGTCATGACCTGATTAGGGAATCCTGGGAGATCCTGGAGAAGCTAATGAAAGCTGTGCATATAAAACAACTTGCAGATGACTATCCCTGGTTGATCCCCCATCACTCCAACAACTGTTTTGTAGAGTATGTGAAAAAGCACTGGCAAGAAGATGCGTTCTTTGGGTATCAGTATCTGAATGGTACCAACACCACTCTGATCCGGAGATGTGATGCCATTCCGGCCAACTTTCCCGTCACCAGCAAAATGGTCTCCCCATTCCTGGACAAGAGCCTGGAAGTGGAATTAAAGGCAGGAAATCTCTTCCTAGTGGACTATAAACTTCTAGACGGAATCAAAGGCAATGTGTTGAAAAAGATTCAGCAATATGTTCCTGCCCCTCTGTGTCTGCTGTACAAGAAGGCAGATGGAAACTTGGTCCCTATTGCTATACAGTTGAAACAGAAGCCCGGCTCGGAAAACCCAATATTTCTGCCCAATGACTCTGTGGACAACTGGCTCTTGGCAAAAGTGCTGGTGCGCAGTGCGGATTTCAACTATTTCGAGTGGATTACTCACCTCCTGCGCACTCACTTGATGGCTGAAGTGTTCTGTCTGGCCACCATGAGACAACTGCCCTCAGTGCACCCTCTGTTTAAGCTCCTGATTCCTCATACACGCTACACACTGCAGATCAACACTATGGCCAGAACCTTTCTGATCAACAAAGGTGGCATTTTTGACAGGGCCTTCAGCACTGGGGGTCCGGCCAAGAAAACTGTGTTGCAGAGGGGCTTCGAGTCCCTGACCTACAGCGCCTTCTGTGTCCCTGACGACATCAAAGTCCGTGGTGTTGAGAATGTGCCCAACTACTACTACAGAGACGATGCTCAGGAGCTGTGGGCAATCATCAATGAGTTTGTGGTGAAGCTGGTCAGTTATTACTACAAGAGCAACACAGATGTGAAGAAGGACTCAGAACTACAAGCTTGGGTGCAGGACATCTTTCAAGCTCTTCTGAGCCGCAAGTCATTAGGCAACATTGAAGAGCTGACCAAGTTTCTGACCATGGTCATTTTCACCTGCTCTGCACAGCACAATGCTGGCAATGCTGGACAGTATGACTTTTCTGTCTGCTTGCCCAACGCCTCGTCGACCCTGCGTCGCCCTCCCCCCACCTCCAAGACCAGCCGTGTGGACTATAGAGGCTGGATCGCTGATGCCCAAAGTGCTGTTAACTCCAGAGCTACCACCTGGGTCCTCACCCGCCCCTCTCATGATCCCGTTTTCTTGGGCCAGTATCCTGAAGAACGCTTCACCGAGGATATCCCGAAGAAGCTGATTAAGGAGTTCCAGTCAGAGATGCAGAAGTGCGATGAGCGAATTAAAAAACGCAATGAAAAACTGGACCTGCCATACACCTACCTGCTGCCAAGTGCCACGGAGAACAGTGTGTCCCTTTGAGGAGCTGCTCAGCATTGTGGGTGCAACACACTTTACATGCAGTGctaaatcatgtttaaaaaaaaaaaaaattagaaatgTGCAAATAACCCTGTGAGGTTTAAGTGCTTAACTGGAATAATAATTTGGCTAATCTGAGTTTTTGAATTATTGTAAGCagtaataagaaatataaaatgataaaaggCACTTGAAGTTTCAAACATATTGTAAGCTAAATGATTTAGGAagtcaaattaagcaaaatattagttcagttaaggtTTAAATTATGTACCCAAGAGCACGGCTGGAACAGAAACCAACAGGACAGTAGGGCAcaagaccagggttgggaacgaatgaaaatgaaagtgttcATATTAACCTAACAATATCATATTAAATAACTTTGCTTACTTGTCTGGATTCCCAAATGATTGTTTTGTACAGTATGGAGGGGGGAGTGGAGGGTGGCAATTGTAACCGAGTTATACATCTAAAAATACACCTGTCACTTTGGAGGCTTGAAAGCAAAATTTCTCTGTGGTTTTGTCTCTTGATTTCCTTGCTGTCCCTGGCTTTTACTCTCCTTCCCCTTTGTTCTCAGTCACCCCTTTAATTTCTCTATTTCCATTAACATCTTTGAATTTCATGCAGTTCAACTCACCTCTCCA

Function

GO:

id name namespace
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00454 LOX2S; lipoxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015589 True 2204 mRNA 0.45 12 13285470 13311221

Neighbor

gene id symbol gene type direction distance location
AMCG00015586 NA coding downstream 91989 13181838 ~ 13193481 (-)
AMCG00015582 NA coding downstream 177016 13098638 ~ 13108454 (-)
AMCG00015579 NA coding downstream 207715 13072507 ~ 13077755 (-)
AMCG00015578 NA coding downstream 230432 13039548 ~ 13055038 (-)
AMCG00015577 tmem17,LOC107753710,LOC107598907 coding downstream 248955 13032041 ~ 13036515 (-)
AMCG00015594 NA coding upstream 50203 13361424 ~ 13364977 (-)
AMCG00015596 NA coding upstream 58182 13369403 ~ 13409708 (-)
AMCG00015593 LOC108268441,LOC105020884,LOC101159514,LOC107676536,LOC107741212,LOC105028768 coding upstream 113248 13424469 ~ 13424876 (-)
AMCG00015595 NA coding upstream 115635 13426856 ~ 13432356 (-)
AMCG00015592 unc93b1 coding upstream 131370 13442591 ~ 13453776 (-)
G98844 NA non-coding downstream 23243 13261011 ~ 13262227 (-)
G98836 NA non-coding downstream 36187 13248836 ~ 13249283 (-)
G98671 NA non-coding downstream 761395 12523793 ~ 12524075 (-)
G98662 NA non-coding downstream 815030 12470098 ~ 12470440 (-)
G98658 NA non-coding downstream 827397 12457626 ~ 12458073 (-)
G98953 NA non-coding upstream 18671 13329892 ~ 13335929 (-)
G98950 NA non-coding upstream 85426 13396647 ~ 13416500 (-)
G98973 NA non-coding upstream 153637 13464858 ~ 13519520 (-)
G98993 NA non-coding upstream 227306 13538527 ~ 13540957 (-)
G98992 NA non-coding upstream 228397 13539618 ~ 13539998 (-)
AMCG00015557 map3k11,LOC101463885,LOC102206973,LOC102778058,LOC100707946 other downstream 854822 12399733 ~ 12430648 (-)
G98546 NA other downstream 1868808 11414367 ~ 11416662 (-)
G98543 NA other downstream 1899271 11353783 ~ 11386199 (-)
AMCG00015540 NA other downstream 1939980 11332663 ~ 11345490 (-)
AMCG00015535 NA other downstream 2024302 11185860 ~ 11261168 (-)
AMCG00015598 timm10,LOC107746912,LOC107674252,LOC107556822 other upstream 146906 13458127 ~ 13468822 (-)
AMCG00015606 NA other upstream 360094 13671315 ~ 13845677 (-)
AMCG00015612 zdhhc5a,zdhhc5 other upstream 523296 13834517 ~ 13864738 (-)
AMCG00015628 NA other upstream 983747 14294968 ~ 14336329 (-)
G99213 NA other upstream 1136490 14447711 ~ 14456695 (-)

Expression


Co-expression Network