AMCG00015598 (timm10,LOC107746912,LOC107674252,LOC107556822)


Basic Information

Item Value
gene id AMCG00015598
gene name timm10,LOC107746912,LOC107674252,LOC107556822
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13458127 ~ 13468822 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015598
ATGGTCCCCAGGGCCATAACGGAAGGTCTCCGCTACCACCGCCAGTCTTGCCTCCCAcctggcagagagagggaggagaaggagtTCAGGAATATGGGATGGCAGCCCCTCACACTCACCTTCCAACATGGCTCTCGCCTCCACTACTACTGCCCCCTCCTTCTTTCCACCCCCTCCACATCCCACCATCCCTGGGGCAAGGAGCAGGAGGAGAGtgagaaggagggggagggggaaagggatgctgtgtctgtgttggcTCCTGGGTTCTCTCACATGTCTGGTTTCAAGGAGGCCAAGCAGAGCCTGCACCTGCATCCCCCTCGAGACCCTGCCATGCCCCACACCAGCCCAGGCACTGCAGGGACTTCAACTCCCATCATGCATCCTTCTGCAGACACTTTAAAGACTATAGGCCCAATCATTAACCTATCTGCAGACACTAGGCAGCCTACAGCTGTCACTTGTCCTTGGTGGCCTACAGCTTCCCTCTTGCCTCCTAGGACAACTTTTGAGGACACTAcaattcccagcatgcacttcTCTGCCTGTGACCGCCTGGAGAACACACATCCCAGCTACTCTGTATCTCCAGGGGGGGTCCTTCTCAGCCCTCCCTCCCCACAGCTTACTCCTGTGGCAGGGGCCCTGGAAATGACAAATCCCAGCATGCACTACTGTTCAGGAAGTGCCCAGGCAGAGACTACAGCCCCCAGGGGCGACTCCCTGAATGACCTCAAGGATGTACTGGAGCACTTCCTGAGAACTGtggaggaggaagggagaggtGGAGGAGAGGGTGGAAGCAGacaagggagggagggggagagaggagttCCATTTTCAacgagagaagaggagaaaggagagaaggaggggagcAAAGGGTGCAGGAGCGGGACTCATCACAGACACAGGTCCAGAGAGAGTCCAAGAGACAGGCCTGAAAAGACTGAGGACAGACCAAGCCACCAGACCCCATCAATCAACCCATACAGAGAGTCACCTCCGCATTCCCCCTCCCCAGCCTTACCCTTGGCTGAGCTTAGCCTTCCACAGGAACTCCATCTCCCAGCGCCCAGAGAGGAGACGAACAGCAAGAGCGAAAAAGatgaagagagggagggaaagacagacagagagatggagatgggGAGAGATGTCCACAAGGAaggaagagagagcgagagggtgAGCGAATCTACACACCTCCCACcaaagaatgagagagaggattgtgggaggaagaaaaagaggAGGAAAATAGTGAAGATCTGCATACCAAGAAAACGCAAgagggagatgagagagagggctggtgggggtggggagaagaggagagagggaatggAAGTGGAAGTGGGGAGGAGGGGCCCCGAAGGACtcaagaggaagagagaggcaTCTgtggaaaggagagagagagtgcagaagagagaggagacggagagagagagggaagaggagagtGCAGGAGAGAAGATGAGAGAGAGCCAGGAGACCAGCAACAATGAGAGAAACCGAGAGGGCGCACTGGATCAAAGCCAAttgggagaggggagagaggagcagGACATGATGAGCACATCTCTTCATGGTGTAAGGAagtgtgggagagggagagaggacacACCTAAACAATGGGAAATACTAGCTAACCATCCCCTTGACCGTGAGACTGGGACTGTGGAGGTGAGGCCGAGTCCTTACCCTGGGACTGAGGAGCTGATTGGCCAGAGAATAGTAGCAGTAAAAGGTGGCAGTTGTCTGTCCACACCTCCCTGGCTTTCAAGGCCTCAGAGTGGGCAGGggggacaggagagagaggagggtcTGGTGtgcaggaggaggagcagaaTGGAGAGGGAGAATGGGGCAACTTTGGCTCAGAGTCCCCAGCCCAGGAGGGGGAAAGAGGCAAGGGTTAGGAGTTGGAGAGGGTCAGTGTGTGCCTGTGAGGAGGGAGAAGTGAGGAGGGCAAGGGAGGTGGGGTCTGCTGTGACCAGGACCCCCAGTAAGGGTACGGGCTGCATCCCCATAGCGAAGAGGGGAAGACTGGGGGCCAGGCCAGTGAGGGAAGGGAGCTGCAGGTGGGGGTGGAGGAGCAGGGACCAGAAAAAAGATGTGccgagaaagaaagaagggagaACAGAGGCAAGGGAGAGGAGACAGAGGATGGGAGGAGTGTTGCGTCGAGCAGGGTTCCCCAACATTACACCAGTGTGCCCCAGTGAAGGAAAGAGGGTTATGGGAGCCCGGGGGAGAGGAGGCACAACAGGAGAGGAGGTGAAGAAGATTGACAGAGAGGAcctgaaagagagaggaagaggaaaaggagggagaagaggaggagagacagacagaccagaAACTGCAtcagaacacagagagagaggaggaggtagagaggaaggaggaggagagctaGATAGACTGGACATTGTCCCAGACCTCAAAGAGAAAGCGAGAGGAGAAAGAGTGAGGGGAGGAGAGCCAGACAGACAGGACAATGCCCCAGACcacaaagagagaggaggaggaagagaggaaggaggaagaggaggagagccAGGCAGACAGGAAACTGATGCAGacctcagagagagaggaggaagaagatgGAAAGAAGGGcaaggaggagaaagaggagaagaGCCAGACAGCCTGGATGCTCCCCCAGACCTAAAacagagaggaggaagaggggaagAGCAAGATAGGCTAGACACTGCCCCCAACCTCAGAGAGAAAagtggaggaagaggggaaggaggaggaagaggagaagagcCAGACAGCTTGGATATTACCACACAACCCAAAGAcagggaggtggagagagaaagggaaaggaaGGGGGAGGTTAGTCCTGTGGGAGATGTAGGAGCTTCATTAGCCATCAGCTCCAGAGACAGCCCAGAGACGAAAAGAAGGGCAAGACCTTGCAAGAAGGGCTGGAGCAGCCAGGAGCAGACGAGGAAGAAGGGAGATCCTGCCTCCTTGCTGGTCTGGCCACTGAAAGAAGCCACCCGGCATCATCTGACCTCGCGGGACTCCCCTCCGCTACACCGCCAGAACACCAAGGAGTCAAAAGGAAGTGTGAacggagaggaggaggaggaggaggaggaggaggaggaggaagttGATGTTCTGGAGTGCTCCAGCCCCACCCCATCTCCACCATGTCATTTCCTGTTGGCAACCCTGAGGGCAGGGCTTACTTGCGGGGACCAATCGGAAGAGGACGCAGAGGAGCAGGAGCTGGAGATCGATtcagtcagtgaggcAGTCGGAGCTCCGGGTTGCTTGCGGAGAGGAGACCGGGGACTGGGAGCGATGGACCCGCTAAAGGCGCAGCAGTTAGCCGCTGAATTGGAGGTGGAGATGATGGCGGATATGTATAACCGGAAGTGTGTGCCTCCCCATTACCGTGAGGCAGAGCTGTCCAAGGGTGAGGCAGTCTGCCTGGACCGCTGTGTGGCAAAGTACCTGGACGTCCATGAGAGACTGGGCCGCCGACTCACTGAGCTCTCGATGCAGGACGAGGAGCTCATGAAGAGGGTGCAGCAGGGGGGACCCGCTgcctctcccactcccactgCAGGACACTGA
>TU123499
AAGTCCTCCAGAAGGAGGTTACAGGGTCAGGGGACGGACACACGTGTTTTCTGACAGTGAAGGTGACAGACGGGAGTGGAAGGCGAAGCGAGTACATTTGAGTCCACAGACGTGTTCACCGAGTTAACTAAACTGGTTAGTCGGAGCTCCGGGTTGCTTGCGGAGAGGAGACCGGGGACTGGGAGCGATGGACCCGCTAAAGGCGCAGCAGTTAGCCGCTGAATTGGAGGTGGAGATGATGGCGGATATGTATAACCGGATGACAAGCGCATGTCACAGGAAGTGTGTGCCTCCCCATTACCGTGAGGCAGAGCTGTCCAAGGGTGAGGCAGTCTGCCTGGACCGCTGTGTGGCAAAGTACCTGGACGTCCATGAGAGACTGGGCCGCCGACTCACTGAGCTCTCGATGCAGGACGAGGAGCTCATGAAGAGGGTGCAGCAGGGGGGACCCGCTgcctctcccactcccactgCAGGACACTGAGATGAGGggcgagagagagggacagggagtgGGTTATTTGGGTGCAAATACACCAATTGACTGACTGGACATTAACCCCCCCAGTGGATTACTGGGCAGTTCTAGTTAATCAAGTTTAGCTCAGTAATGTCTCAAGTTCACCTATACCCGACTCACAGGTCTTTGGTTAGTCTAAATGAGGTCCCAGAGCCCCATTAGTGTTCCTTAATTAACTTGTTAATCAGTTGTTTGCTGAGATGCGTTCCCTTTTTCACTTTGTAGTATGTGTTGTTGTTACAgatgttgttgctgtttacAGTGGAATGAGTGTACCTGGTCAAGCAgacttgtttttgttaaattaccTAATTAATAAAAGTTCTCATTATTTTATACCTA

Function

symbol description
timm10 Predicted to enable metal ion binding activity. Predicted to be involved in protein insertion into mitochondrial inner membrane. Predicted to act upstream of or within protein transport. Predicted to be located in membrane and mitochondrion. Predicted to be part of mitochondrial intermembrane space protein transporter complex. Predicted to be active in mitochondrial inner membrane. Is expressed in several structures, including alar plate midbrain region; digestive system; eye; optic tectum; and pectoral fin bud. Orthologous to human TIMM10 (translocase of inner mitochondrial membrane 10).

NR:

description
PREDICTED: mitochondrial import inner membrane translocase subunit Tim10

GO:

id name namespace
GO:0045039 protein insertion into mitochondrial inner membrane biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015598 True 3615 mRNA 0.57 7 13458554 13468822
TU123499 False 862 TUCP 0.50 3 13458127 13459789

Neighbor

gene id symbol gene type direction distance location
AMCG00015592 unc93b1 coding downstream 4351 13442591 ~ 13453776 (-)
AMCG00015595 NA coding downstream 25771 13426856 ~ 13432356 (-)
AMCG00015593 LOC108268441,LOC105020884,LOC101159514,LOC107676536,LOC107741212,LOC105028768 coding downstream 33251 13424469 ~ 13424876 (-)
AMCG00015596 NA coding downstream 48419 13369403 ~ 13409708 (-)
AMCG00015594 NA coding downstream 93150 13361424 ~ 13364977 (-)
AMCG00015599 NA coding upstream 51842 13520664 ~ 13521014 (-)
AMCG00015603 NA coding upstream 137553 13606375 ~ 13624705 (-)
AMCG00015601 NA coding upstream 194835 13663657 ~ 13665777 (-)
AMCG00015605 NA coding upstream 272075 13740897 ~ 13742235 (-)
AMCG00015604 NA coding upstream 285246 13754068 ~ 13760730 (-)
G98950 NA non-coding downstream 41627 13396647 ~ 13416500 (-)
G98953 NA non-coding downstream 122198 13329892 ~ 13335929 (-)
G98844 NA non-coding downstream 195900 13261011 ~ 13262227 (-)
G98836 NA non-coding downstream 208844 13248836 ~ 13249283 (-)
G98671 NA non-coding downstream 934052 12523793 ~ 12524075 (-)
G98993 NA non-coding upstream 69705 13538527 ~ 13540957 (-)
G98992 NA non-coding upstream 70796 13539618 ~ 13539998 (-)
G99002 NA non-coding upstream 110903 13579725 ~ 13816527 (-)
G99049 NA non-coding upstream 414301 13883123 ~ 13884670 (-)
G99051 NA non-coding upstream 432534 13901356 ~ 13902314 (-)
AMCG00015557 map3k11,LOC101463885,LOC102206973,LOC102778058,LOC100707946 other downstream 1027479 12399733 ~ 12430648 (-)
G98546 NA other downstream 2041465 11414367 ~ 11416662 (-)
G98543 NA other downstream 2071928 11353783 ~ 11386199 (-)
AMCG00015540 NA other downstream 2112637 11332663 ~ 11345490 (-)
AMCG00015535 NA other downstream 2196959 11185860 ~ 11261168 (-)
AMCG00015606 NA other upstream 202493 13671315 ~ 13845677 (-)
AMCG00015612 zdhhc5a,zdhhc5 other upstream 365695 13834517 ~ 13864738 (-)
AMCG00015628 NA other upstream 826146 14294968 ~ 14336329 (-)
G99213 NA other upstream 978889 14447711 ~ 14456695 (-)
G99286 NA other upstream 1012372 14481194 ~ 14482908 (-)

Expression


Co-expression Network