AMCG00015611 (clp1,LOC107750374,LOC107680590,LOC107594950)


Basic Information

Item Value
gene id AMCG00015611
gene name clp1,LOC107750374,LOC107680590,LOC107594950
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13865851 ~ 13869990 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015611
AGCTATGTCCTCAGAGTCGGAGCGGGCAGGTGGGAGCGAGGAGGGGACCAGCGGTGCAGGCTCTGGGTCAGGGGGGACAGGGGGGGTGCGGTTtgacctggagagagagacggagctGCGGTTCGAGGTGGAGGGACCCGAGCGAGTCACCCTGGAACTTCTGTCGGGCCTGGGTGAGGTGTTCGGGTCAGAGCTGAACCGCAACAAGAAGTACAGCTTTGGACCAGGGGCCAAGATCGCCGTGTTCACCTGGCAGGGTTGCAGTGTCTGTCTCACCGGCAAGACTGAGACAGCCGTGGCACTGCCAGGCACCTTAGGAGCGCTGGGCATTGAGCGTCCCGCTGATCTGGAGGAGGGCTTTTCCGTACAGGCGCCTCTTGTCTACCACTTTGGCTCCACCAGCCCCGGCACGAACATCAAACTGTACAACAagttGACGTCCTGCCTGGCGGAGGTGTTCAGTCAGAGGTGCGAGGCGAGTCGGCGCTCCAGCGTGTCAGGCTGTGTGATCAACACTTGCGGCTGGGTGAAGGGGGCCGGGTACCAGGCCCTGGTGCACACAGCCTCTGCCTTCCAGGTAGACGTAGTACTGGTCCTGGACCAGGAGCGACTGTACAACGAGCTCAAGAGGGACCTTCCCCACTTCGTCAAGGTTGTCCTGCTGCCCAAGTCTGGAGGGgTGGTAGAGCGCTCCAAGGCGTGCCGACGGGAGGCACGGGACGATCGGATTCGGGAGTACTTCTATGGCTTCCGCGGTGCCTCCTTCTTCCCCCACGCCTTCGATGTGCGCTTCTCCGACGTACGCATCTTCAAGATCGGTGCCCCCTCAATCCCGGACTCCTGCCTCCCCTTGGGCATGTCCCAGGACGACACCCAGCTCAAACTGGTCCCAGTCACCCCGGGCCGGGACCTGGCCCACCACGTCCTGAGCGTCAGCAGtgtgggagacagagagggggaggacgGAGGGAAAGGGGCGGCAGGGGTGCTGGACAGCCCGGTGTGTGGCTTCATCGTGGTGACGGCGGTGGATACTCAGAACCAGCTGATGACCGTGCTGAGCCCTGCCCCCCGGCCCCTCCCTCGCCACACCCTACTCATCATGGACATCCGGTTTATTGATCTGAAGTAGAGAGGATGTCAAATGTCAAAACACTGGCTGAGACATTTAcggactgattgactgactgactgactaacttaCGACTGATACGCTGCCTGAgtgactgaaacactgactgactgagacactgactgcCTCCCTCATATTTCACCCCTTATAAATCTCAAACAGAAACATTGAAtaataaatctatttattttatgaccaAAAGTACTTTTGGGAGTGTGGTGCCAATGGAAGGGTaacttttttaatattctaagggtttttatttttatttggatgaGTGTCAGTGATGtctatttttttacatttctgtcacTACACTTTTCTGGCTTCCTTTGGCTTGTCACActttgtacagttttgtttgtttcttt

Function

symbol description
clp1 Enables polyribonucleotide 5'-hydroxyl-kinase activity. Acts upstream of or within brain development and spinal cord motor neuron differentiation. Predicted to be located in nucleus. Predicted to be part of mRNA cleavage factor complex and tRNA-intron endonuclease complex. Is expressed in brain and motor neurons. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 10. Orthologous to human CLP1 (cleavage factor polyribonucleotide kinase subunit 1).

NR:

description
polyribonucleotide 5'-hydroxyl-kinase Clp1

GO: NA

KEGG:

id description
K14399 CLP1, HERB; polyribonucleotide 5'-hydroxyl-kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015611 True 1503 mRNA 0.56 4 13865851 13869990

Neighbor

gene id symbol gene type direction distance location
AMCG00015613 NA coding downstream 36129 13826977 ~ 13829722 (-)
AMCG00015604 NA coding downstream 105121 13754068 ~ 13760730 (-)
AMCG00015605 NA coding downstream 123616 13740897 ~ 13742235 (-)
AMCG00015601 NA coding downstream 200074 13663657 ~ 13665777 (-)
AMCG00015603 NA coding downstream 241146 13606375 ~ 13624705 (-)
AMCG00015614 NA coding upstream 187349 14057339 ~ 14076142 (-)
AMCG00015615 NA coding upstream 209504 14079494 ~ 14084022 (-)
AMCG00015623 NA coding upstream 227435 14097425 ~ 14101752 (-)
AMCG00015620 NA coding upstream 244004 14113994 ~ 14118650 (-)
AMCG00015621 NA coding upstream 252476 14122466 ~ 14128364 (-)
G99002 NA non-coding downstream 49324 13579725 ~ 13816527 (-)
G98993 NA non-coding downstream 324894 13538527 ~ 13540957 (-)
G98992 NA non-coding downstream 325853 13539618 ~ 13539998 (-)
G98973 NA non-coding downstream 346331 13464858 ~ 13519520 (-)
G98950 NA non-coding downstream 449351 13396647 ~ 13416500 (-)
G99049 NA non-coding upstream 13133 13883123 ~ 13884670 (-)
G99051 NA non-coding upstream 31366 13901356 ~ 13902314 (-)
G99055 NA non-coding upstream 48085 13918075 ~ 13918324 (-)
G99058 NA non-coding upstream 55258 13925248 ~ 13931122 (-)
G99063 NA non-coding upstream 164268 14034258 ~ 14038303 (-)
AMCG00015612 zdhhc5a,zdhhc5 other downstream 1113 13834517 ~ 13864738 (-)
AMCG00015606 NA other downstream 20174 13671315 ~ 13845677 (-)
AMCG00015598 timm10,LOC107746912,LOC107674252,LOC107556822 other downstream 397029 13458127 ~ 13468822 (-)
AMCG00015557 map3k11,LOC101463885,LOC102206973,LOC102778058,LOC100707946 other downstream 1435203 12399733 ~ 12430648 (-)
G98546 NA other downstream 2449189 11414367 ~ 11416662 (-)
AMCG00015628 NA other upstream 424978 14294968 ~ 14336329 (-)
G99213 NA other upstream 577721 14447711 ~ 14456695 (-)
G99286 NA other upstream 611204 14481194 ~ 14482908 (-)
AMCG00015640 LOC103356187,LOC107382365,LOC107664566,LOC107551445,LOC107556825,LOC101483122,LOC102289392 other upstream 632774 14502764 ~ 14515279 (-)
AMCG00015642 LOC102792555 other upstream 700661 14570651 ~ 14577633 (-)

Expression


Co-expression Network