AMCG00015626 (ankrd13d,LOC107742695)


Basic Information

Item Value
gene id AMCG00015626
gene name ankrd13d,LOC107742695
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14376755 ~ 14388739 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015626
ATGGCCAAGGAGGCTTATCCGCTGCACTATCTCGTCTGGCACAACCAGTACATAGAACTGGACCGGGAGCTGTCGAAAAACAAAATCTTGCTGGCCGCCATGACGCCCAGCCAGGACAGTGTGGCCCAGAGACTGACCGCACCTGTGGTCAGCACACACCTGGACACCAAGAACATCGCCTTCGAGAGgaATAAGTCGGGTATCTGGGGCTGGCGCTCGGAGAAGTCTGAGTTTATCAGTGGATACGAAGCcaaggTGTACAGCGCCAGTAACGTTGAGCTGGTGACCCGATCGCGAACAGAACATCTGTCTGACCAGGACAAGAACCGCAGCAAAGgcTCCAAGACTCCCCTCCAGTCTTTCCTGGGAATTGCAGAGCAGCACGTTTCTCACAATGGGaGTCAGGTGTCTCAGTGTGCCAGCCCCACTAACCCCAGCGCCCTGACTGCGGAAGAGTACTTTAGCCCTGACCCCACGCTGCCTCACCGGGATATCGGCCGTCCCTTGGAGCTCAGCAGCAAAGTGCAGAGgttcaAGGCCACTCTGTGGCTCAGTGAGTGTCACCCCCTGTCTCTGGGGGAGCAGGTGACCCCCATCATTGACCTCATGGCCATCTCCAATGCCCACTTCGCCAAGCTGAGGGACTTCATCACCCTGAGGCTGCCCCCCGGCTTCCCTGTCAAGATCGagatCCCCCTGTTCCATGTGCTCAATGCCAGGGTGACCTTTAGTAACTTGTGTGGTTGTGATGAGCCGGTCAGCTCCGTCACTGTCTGCCCCCCGCCAGAAGAGAGTGACGCAGACGCAGGTGGTACCCCCCCACCACTGCAGTGCGAGGTGGACCCCTCGGTGTTTGAGCCTCCCCCAGAATACACCACGCTCGGCGCGGGCCGCAGCGAGCCAATGAGAGACGAGGATGACAACCTGCTGCAGTTCGCCATCCAGCAGAGCCTGTTGGACGCAGGGACTGAGAGTGACCAGGTGAGGCGCTCCTGTCTCTGTAATATAGGCACTGTTAATAAGAAGCTCACACTGATACTGATGCAggccaTACAggagtccctctctctctctctggcaggaGGTAATGGCGGTGGGGGGCGGGgtgtggccagcacagtcacatCCACAACTGAAGGGGAGGAGTCAATCGATGAAGGGGTGGAGCCTCCTCACTCTGCCCCACCCCCGACTCTCCCCCTGTCCCCCTCTGACCCTGCCCGCTCCCCGCCCTCCTACAGCTCATTGTCTGACCCCAGCTACCCCCCCAGGGTGTCTGGGGCCTTTGCTGTGGCAACCAGCTTCGACGAGCAGCTCCGTATCGCCATGGAGCTCTCCTGCCGGGAACAGGAAGAGCAGGACAGGAGGaggcgggaggaggaggaggagctggagaggaTACTACAGCTGTCACTCACTGAGAAGTAG

Function

symbol description
ankrd13d Predicted to be located in late endosome and plasma membrane. Predicted to be active in cytoplasm. Orthologous to human ANKRD13D (ankyrin repeat domain 13D).

NR:

description
PREDICTED: ankyrin repeat domain-containing protein 13D

GO: NA

KEGG:

id description
K21437 ANKRD13; ankyrin repeat domain-containing protein 13

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015626 True 1428 mRNA 0.59 10 14376755 14388739

Neighbor

gene id symbol gene type direction distance location
AMCG00015627 NA coding downstream 103387 14256825 ~ 14273368 (-)
AMCG00015622 NA coding downstream 204156 14165698 ~ 14172599 (-)
AMCG00015624 NA coding downstream 222611 14147522 ~ 14154144 (-)
AMCG00015621 NA coding downstream 248391 14122466 ~ 14128364 (-)
AMCG00015620 NA coding downstream 258105 14113994 ~ 14118650 (-)
AMCG00015633 NA coding upstream 7026 14395765 ~ 14415538 (-)
AMCG00015631 stx3,stx2,LOC103390944 coding upstream 32015 14420754 ~ 14433707 (-)
AMCG00015634 ran1,ran,LOC107588340 coding upstream 47739 14436478 ~ 14444158 (-)
AMCG00015632 NA coding upstream 56614 14445353 ~ 14446018 (-)
AMCG00015635 NA coding upstream 79622 14468361 ~ 14474102 (-)
G99162 NA non-coding downstream 157971 14062419 ~ 14218784 (-)
G99167 NA non-coding downstream 270310 14105454 ~ 14106445 (-)
G99165 NA non-coding downstream 284940 14090037 ~ 14091815 (-)
G99063 NA non-coding downstream 338452 14034258 ~ 14038303 (-)
G99058 NA non-coding downstream 445633 13925248 ~ 13931122 (-)
G99217 NA non-coding upstream 69726 14458465 ~ 14464160 (-)
G99296 NA non-coding upstream 149932 14538671 ~ 14603977 (-)
G99289 NA non-coding upstream 154222 14542961 ~ 14624486 (-)
G99302 NA non-coding upstream 173439 14562178 ~ 14563226 (-)
G99332 NA non-coding upstream 400180 14788919 ~ 14789198 (-)
AMCG00015628 NA other downstream 40426 14294968 ~ 14336329 (-)
AMCG00015612 zdhhc5a,zdhhc5 other downstream 512017 13834517 ~ 13864738 (-)
AMCG00015606 NA other downstream 531078 13671315 ~ 13845677 (-)
AMCG00015598 timm10,LOC107746912,LOC107674252,LOC107556822 other downstream 907933 13458127 ~ 13468822 (-)
AMCG00015557 map3k11,LOC101463885,LOC102206973,LOC102778058,LOC100707946 other downstream 1946107 12399733 ~ 12430648 (-)
G99213 NA other upstream 58972 14447711 ~ 14456695 (-)
G99286 NA other upstream 92455 14481194 ~ 14482908 (-)
AMCG00015640 LOC103356187,LOC107382365,LOC107664566,LOC107551445,LOC107556825,LOC101483122,LOC102289392 other upstream 114025 14502764 ~ 14515279 (-)
AMCG00015642 LOC102792555 other upstream 181912 14570651 ~ 14577633 (-)
AMCG00015645 dtx4,dtx1,LOC108426833,LOC105020655,LOC106577571,LOC106608654,LOC107683563 other upstream 292055 14680794 ~ 14738274 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G324386 NA non-coding CI01000110 null 3543379 ~ 3558140 (+)