AMCG00015634 (ran1,ran,LOC107588340)


Basic Information

Item Value
gene id AMCG00015634
gene name ran1,ran,LOC107588340
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14436478 ~ 14444158 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015634
ATGACCACGGGAAAGGCGGCGCTCGGAGCGGATGAAGCCGTCACGCAGGCCGCCATTTGCTCCTTTTTTCCCTCGGTTCGTCTGTCGCCGGCTCAGTGTGCCATCATCATGTTTGACGTGACGTCGCGGGTGACCTACAAGAATGTGCCCAACTGGCACCGAGACCTGGTGCGCGTGTGCGAGAACATCCCCATCGTGCTCTGCGGCAACAAGGTGGACATCAAGGACAGGAAGGTCAAGGCCAAGAGCATTGTCTTCCACCGCAAGAAGAACCTGCAGtacTATGACATTTCGGCCAAGAGTAACTATAACTTTGAGAAGCCGTTCCTGTGGCTGGCCCGGAAGTTAATCGGTGACCCCAACCTGGAGTTTGTTGCCATGCCAGCGCTCGCCCCCCCCGAGGTCTCTATGGACCCCTCCCTCGCTGCCCAGTACGAGCACGACCTCAAGGTGGCGTCAGAAACAGCACTACCAGATGAAGATGATGACCTTTAACCTGTGACCTCCCCTGGGGGCTGGTGGGagggggggcactgctgttgacCTTACACCTTTACTGTAAAACCTGatctcagattattttttttaactattttatttttttcattttgaacaaTGGACATCCTGTAATACTTGTACtgtccagtacagtacagaaacacacagtgcagtaaaaaCCCAGTACagacatacagtacagtgcagtacagactCGCACtcagaatgatttaaaaaaaaaaaaagcacttatttgacaaaaaacagaacatcttTGAATAAAAACTATCTGAATTTAGA

Function

symbol description
ran Predicted to enable GTP binding activity; GTPase activity; and magnesium ion binding activity. Acts upstream of or within neural retina development. Predicted to be located in cytosol and nuclear envelope. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including brain; digestive system; eye; pronephros; and splanchnocranium. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human RAN (RAN, member RAS oncogene family).

NR:

description
GTP-binding nuclear protein Ran

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006913 nucleocytoplasmic transport biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015634 True 798 mRNA 0.49 4 14436478 14444158

Neighbor

gene id symbol gene type direction distance location
AMCG00015631 stx3,stx2,LOC103390944 coding downstream 2771 14420754 ~ 14433707 (-)
AMCG00015633 NA coding downstream 20940 14395765 ~ 14415538 (-)
AMCG00015626 ankrd13d,LOC107742695 coding downstream 47739 14376755 ~ 14388739 (-)
AMCG00015627 NA coding downstream 163110 14256825 ~ 14273368 (-)
AMCG00015622 NA coding downstream 263879 14165698 ~ 14172599 (-)
AMCG00015632 NA coding upstream 1195 14445353 ~ 14446018 (-)
AMCG00015635 NA coding upstream 24203 14468361 ~ 14474102 (-)
AMCG00015641 LOC107382365,LOC104937879,LOC102289392 coding upstream 73300 14517458 ~ 14520286 (-)
AMCG00015644 NA coding upstream 228053 14672211 ~ 14675992 (-)
AMCG00015649 NA coding upstream 477154 14921312 ~ 14928105 (-)
G99162 NA non-coding downstream 217694 14062419 ~ 14218784 (-)
G99167 NA non-coding downstream 330033 14105454 ~ 14106445 (-)
G99165 NA non-coding downstream 344663 14090037 ~ 14091815 (-)
G99063 NA non-coding downstream 398175 14034258 ~ 14038303 (-)
G99058 NA non-coding downstream 505356 13925248 ~ 13931122 (-)
G99217 NA non-coding upstream 14307 14458465 ~ 14464160 (-)
G99296 NA non-coding upstream 94513 14538671 ~ 14603977 (-)
G99289 NA non-coding upstream 98803 14542961 ~ 14624486 (-)
G99302 NA non-coding upstream 118020 14562178 ~ 14563226 (-)
G99332 NA non-coding upstream 344761 14788919 ~ 14789198 (-)
AMCG00015628 NA other downstream 100149 14294968 ~ 14336329 (-)
AMCG00015612 zdhhc5a,zdhhc5 other downstream 571740 13834517 ~ 13864738 (-)
AMCG00015606 NA other downstream 590801 13671315 ~ 13845677 (-)
AMCG00015598 timm10,LOC107746912,LOC107674252,LOC107556822 other downstream 967656 13458127 ~ 13468822 (-)
AMCG00015557 map3k11,LOC101463885,LOC102206973,LOC102778058,LOC100707946 other downstream 2005830 12399733 ~ 12430648 (-)
G99213 NA other upstream 3553 14447711 ~ 14456695 (-)
G99286 NA other upstream 37036 14481194 ~ 14482908 (-)
AMCG00015640 LOC103356187,LOC107382365,LOC107664566,LOC107551445,LOC107556825,LOC101483122,LOC102289392 other upstream 58606 14502764 ~ 14515279 (-)
AMCG00015642 LOC102792555 other upstream 126493 14570651 ~ 14577633 (-)
AMCG00015645 dtx4,dtx1,LOC108426833,LOC105020655,LOC106577571,LOC106608654,LOC107683563 other upstream 236636 14680794 ~ 14738274 (-)

Expression


Co-expression Network