AMCG00015641 (LOC107382365,LOC104937879,LOC102289392)


Basic Information

Item Value
gene id AMCG00015641
gene name LOC107382365,LOC104937879,LOC102289392
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14517458 ~ 14520286 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015641
ATGGACAATGCCCACACTAAGACAGTGGAGGAGGTGCTGCAGTGCTTTGGGGTGAACGAGTCCACAGGACTGAGCTGTGAGCAGGTCAAGAAGGCGAAGGAAAGATGGGGTCCCAACGtgaagTCTCTGTGGGAGCTGGTGCTGGAGCAGTTTGAGGATCTCCTGGTCAGGATCTTACTGCTGGCTGCCTGCATCTCCTTTgcTCTGGCCTGGTTTGAGGAGGGGGAGGGTACCATCACTGCTTTTGTGGAGCCCTTTGTCatcctcctcatcctcatcgCTAATGCCATCGTGGGAGTGTGGCAGGAGCGCAATGCGGAGAATGCCATTGCAGCGCTGAAGGAGTACGAGCCGGAGATGGGAAAGGTGTACCGGCAGGACAGGAAGAGTGTCCAGAGGATCAAAGCCACGGACATTGTGCCTGGAGACATCGTGGAGGTTGCAGtTGGGGACAAGGTACCGGCCGACATCCGCATCACCTCCATCCGCTCCACCACACTGCGGGTGGACCAGTCCATTCTGACGGGGGAGTCCGTGTCCGTCATCAAGCACACGGACCCTGTACCCGACCCCCGTGCCGTCAACCAGGACAAGAAGAACATGCTCTTCTCTTGA

Function

NR:

description
PREDICTED: sarcoplasmic/endoplasmic reticulum calcium ATPase 2-like isoform X1

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015641 True 615 mRNA 0.58 6 14517458 14520286

Neighbor

gene id symbol gene type direction distance location
AMCG00015635 NA coding downstream 43356 14468361 ~ 14474102 (-)
AMCG00015632 NA coding downstream 71440 14445353 ~ 14446018 (-)
AMCG00015634 ran1,ran,LOC107588340 coding downstream 73300 14436478 ~ 14444158 (-)
AMCG00015631 stx3,stx2,LOC103390944 coding downstream 83751 14420754 ~ 14433707 (-)
AMCG00015633 NA coding downstream 101920 14395765 ~ 14415538 (-)
AMCG00015644 NA coding upstream 151925 14672211 ~ 14675992 (-)
AMCG00015649 NA coding upstream 401026 14921312 ~ 14928105 (-)
AMCG00015651 NA coding upstream 419760 14940046 ~ 14943540 (-)
AMCG00015652 NA coding upstream 428957 14949243 ~ 14955830 (-)
AMCG00015655 NA coding upstream 573834 15094120 ~ 15108025 (-)
G99217 NA non-coding downstream 53298 14458465 ~ 14464160 (-)
G99162 NA non-coding downstream 298674 14062419 ~ 14218784 (-)
G99167 NA non-coding downstream 411013 14105454 ~ 14106445 (-)
G99165 NA non-coding downstream 425643 14090037 ~ 14091815 (-)
G99063 NA non-coding downstream 479155 14034258 ~ 14038303 (-)
G99296 NA non-coding upstream 18385 14538671 ~ 14603977 (-)
G99289 NA non-coding upstream 22675 14542961 ~ 14624486 (-)
G99302 NA non-coding upstream 41892 14562178 ~ 14563226 (-)
G99332 NA non-coding upstream 268633 14788919 ~ 14789198 (-)
G99341 NA non-coding upstream 320350 14840636 ~ 14840842 (-)
AMCG00015640 LOC103356187,LOC107382365,LOC107664566,LOC107551445,LOC107556825,LOC101483122,LOC102289392 other downstream 2179 14502764 ~ 14515279 (-)
G99286 NA other downstream 34550 14481194 ~ 14482908 (-)
G99213 NA other downstream 60763 14447711 ~ 14456695 (-)
AMCG00015628 NA other downstream 181129 14294968 ~ 14336329 (-)
AMCG00015612 zdhhc5a,zdhhc5 other downstream 652720 13834517 ~ 13864738 (-)
AMCG00015642 LOC102792555 other upstream 50365 14570651 ~ 14577633 (-)
AMCG00015645 dtx4,dtx1,LOC108426833,LOC105020655,LOC106577571,LOC106608654,LOC107683563 other upstream 160508 14680794 ~ 14738274 (-)
AMCG00015647 NA other upstream 258144 14778430 ~ 14795425 (-)
G99426 NA other upstream 582331 15102617 ~ 15189394 (-)
AMCG00015659 NA other upstream 650329 15170615 ~ 15200791 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001443 si:dkey-28b4.8 coding NC_007112.7 CM002885.2 44651727 ~ 44704261 (-)