AMCG00015642 (LOC102792555)


Basic Information

Item Value
gene id AMCG00015642
gene name LOC102792555
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14570651 ~ 14577633 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015642
ATGATGAACTGCATCACAGACTTTTTCACCTATGAGACGACCAAGTCTGTGGTGGTGAAGAGCTGGACCATCGGCATCATCAACAGAGTGGTGCAGCTTCTGATCATCACCTACTTCATAGGCTGGGTGTTCTACCATGAGAAGGCCTATCAGgagtggGATTTGAAGGCGGAGGAGGCGAAGAGAGCGTATGAGAAGGCGATGAAGGAGTACAGAGAAAGCGGCGGGGCACCAGCCCCAAGCAAGAAggAGGCAAAGAAGAAGGGGAAGGGGGCAggagaagagaagaagaagaaggtcGGGGGCCGGGGCGGGGCGGCAGAGCGCGAGAAGGAGCgggagagagagcgcgagaAGGAGCGGGAGAAGGGCGGAGACAGCTTCAAGAGCCGCGAGTTCATCTCCAGCGACGAGAGCTCCGAGTCTGACTCCGCCCGGGACCgcaagggcaagggcaagggcaagggcaagggcaagAGCAAGgaatccgatgaagaggaagaggagataGCGAGTACCCCCCCCAGCTCGGAGGAGTCGGGATCAGACTGA
>TU123992
ccccccccccccccctctctctctctctctctctctctctctctctctctctcaggagtggGATTTGAAGGCGGAGGAGGCGAAGAGAGCGTATGAGAAGGCGATGAAGGAGTACAGAGAAAGCGGCGGGGCACCAGCCCCAAGCAAGAAggAGGCAAAGAAGAAGGGGAAGGGGGCAggagaagagaagaagaagaaggtcGGGGGCCGGGGCGGGGCGGCAGAGCGCGAGAAGGAGCgggagagagagcgcgagaAGGAGCGGGAGAAGGGCGGAGACAGCTTCAAGAGCCGCGAGTTCATCTCCAGCGACGAGAGCTCCGAGTCTGACTCCGCCCGGGACCgcaagggcaagggcaagggcaagggcaagggcaagAGCAAGgaatccgatgaagaggaagaggagataGCGAGTACCCCCCCCAGCTCGGAGGAGTCGGGATCAGACTGAGGCCAAGCTCGTTAACCAGTTAACTGCACTGATTGACTAACGAGGGAGGGGAGTAGGGGCTGGGGGAGTGTGACtatggacacagagagagacgagacaaaaacatttacagaccgggaagtggagagagacagacccaTTCATTCAGACTGCCACACACAGTAAATGTGTCTGCATTTCTCCAAAGTATGAAAACTGAGTCATCCTCCCAAAGACTCAAtgcatttcctctctctctgtctatatgtatatattatttgtgcttAAAATACTATTCAGTATCATCTGTACCCCAGTTTGACTTGTCCTATAAATTTGAATATTTCCAAGTTGTTAAACAAGGTGTACATTTCATGCTTTTTTCTTAGATACAGTGTGTGTTAGCCTGTTACATGTAGAGAATTCAGGAAGGGAAGGTGGGAGGCAGATCACACactcataattatttttttttatggatttttttttttgcaatgtagTCTTGTGAGCTACATCTCCAATGATCCTTAATAAGATCAGAAGTTTTTATTGCAGGTGGGTCCAGGATCCCAAAGCATTGTGGGATGTTTCATTCCTGAGCTCTTCAATCCAGGCAGAATggttgtaattaattaaatttccCATGATGCCATGCGCTTTCACTATAGTCCTTTATTTGCCGTGTCTATAGACCACACCCATCTCCGTCAAGCCTTTGCTGCCTCATGCATCCTGATACTGGGCAATGGTGGTTGTTCCCAGGGTGCACTGGGAACTAGTCTTTCAAACCCCCAAGGATTATTGTTCACATCTGTCAGTAGACCAACTGTCTCTTTCTGTGGGAAAAGACTCTGTTTGGCACTTTGAATTGATGCAGGTTATTTTATATTCCTTATTGTGGTAGTAATTATTTCTAGTTTCTACAAGGTGTTAGTTTATATCTCAACTCCTCTTTTCCTCCTGTTCTCATCCCTCCCCTATTGCCTGTGTTTATGAGGGAGGGATTCTGAGCTTTTTCCTGATCTTTTCCacatccccctccccctctctctgcatctcCTTACTGTACTTATTTGCAGAGACCTACTAAGAGAGAGCAGACCCCCTCAGTAATAAACACCCAAggacgggacaggacaggacaggacaggacaggacagagagagagagagatacagggAGTAGAGGAAAGGTAGATttttacagacagacagctaTCTAGCTAAGAAGCAGTGGCCAGGTTCTGTAGTTGCCGTTGTGAGTGTGCTTGTGTTGTCTTCTCGTGCGACATGTTTGAATGGTCAGTGTGTACACCAGACCAATGCAGTAACTGACACAATAAACCTGT
>TU123993
aaagaagCAGACAAACTCAGATACTcagtgacagagagaaagacgACTAAATAGTCAGACTGAGAGAGACGCTCACTTTCAgaaagacaggcaggcagacacacacacttgcacataCTCTTGTGCCCAAACACAGATACATAATTAACGAGGGAGGGCAATTACTGTGGAGATTCCAGGAAGCTCCGGGGCCCGCGTCAGTCCCAACTCAACGAGGGCAACCCGCACGTGTGAGCGAggagtggggagggggaggagaggaggatcCTGAAAGCAAATGTATTAGTAGTCatcattatgatgatgatgattatgaatGATAATGGTAGAATTCATTATATGATTAGTAGTAAGTGGTCTTAGTAGTCGTGGTGGTAAATAGTTGTAGTAGTAGGTCGTATTAAATAGTGATAGATTGCTAAAGTGAGAGCAGGCAGGggtgggagacagagagactgagggaggagagagagggagagatgggggtGGATATAGGGAGGGGCAGGGCGAAGGGTGTGGTGTTAGAGAGGATGggttaaagagagagaaaggaaaacgGACCGAGAAAGACATTCTCCTGGACCAGAAGACTGATACACAGTGCAGAGGTGATGCAAACTGGGACTCAGACTGACTGAGAAGAGCCCACTGTGTCTTCAATTACTGCAGCCAGATccggagaaagagggagagagagaaacaggaagcGCAATACATAGAGAtcgagagagagacacacacacacagtaaatcaGATTAAACACACTGGGAGAGAcaacacctctctctctctctctctctctctctctttctctctcacacacacacacacacaaccccttCTGATCACACTGTAGTCCTCCCTCATACTCGCACACAGACACGTACTCACCGACGCATACATTCACTCACACTGAAGATGATGAACTGCATCACAGACTTTTTCACCTATGAGACGACCAAGTCTGTGGTGGTGAAGAGCTGGACCATCGGCATCATCAACAGAGTGGTGCAGCTTCTGATCATCACCTACTTCATAGGCTGGGTGTTCTACCATGAGAAGGCCTATCAGGTGAGAGACACAGCCATCGAGTCGTCAGTAATGACCAAGGTCAAGGGCTTCGGGGTCTACAACGGCAAGGTCATGGACGTGGCCGACTACGTCATCCCCACACAGGGCGCCTCAGTGTTCTGCATCATCACCAAGCTGATCACCACTGAGAACCAGATGCAGGGATATTGTCCTGAGaCTGAGCCAAAGTTTGGCTGTAAGGATGACAGTGACTGCACTCACTGGATGCAAAATACTGGGGGGAAcgGTATGAAAACAGGTCGATGTGTCGGCTTTAACAGCTCCTATAGGACCTGTGAGATCAGAGGCTGGTGCCCAGCAGAGATTGACACCATAAAGACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015642 False 552 mRNA 0.59 5 14571978 14575815
TU123992 True 1781 TUCP 0.48 3 14570651 14573089
TU123993 False 1414 TUCP 0.49 6 14574366 14577633

Neighbor

gene id symbol gene type direction distance location
AMCG00015641 LOC107382365,LOC104937879,LOC102289392 coding downstream 50365 14517458 ~ 14520286 (-)
AMCG00015635 NA coding downstream 96549 14468361 ~ 14474102 (-)
AMCG00015632 NA coding downstream 124633 14445353 ~ 14446018 (-)
AMCG00015634 ran1,ran,LOC107588340 coding downstream 126493 14436478 ~ 14444158 (-)
AMCG00015631 stx3,stx2,LOC103390944 coding downstream 136944 14420754 ~ 14433707 (-)
AMCG00015644 NA coding upstream 94578 14672211 ~ 14675992 (-)
AMCG00015649 NA coding upstream 343679 14921312 ~ 14928105 (-)
AMCG00015651 NA coding upstream 362413 14940046 ~ 14943540 (-)
AMCG00015652 NA coding upstream 371610 14949243 ~ 14955830 (-)
AMCG00015655 NA coding upstream 516487 15094120 ~ 15108025 (-)
G99302 NA non-coding downstream 7425 14562178 ~ 14563226 (-)
G99217 NA non-coding downstream 106491 14458465 ~ 14464160 (-)
G99162 NA non-coding downstream 351867 14062419 ~ 14218784 (-)
G99167 NA non-coding downstream 464206 14105454 ~ 14106445 (-)
G99165 NA non-coding downstream 478836 14090037 ~ 14091815 (-)
G99332 NA non-coding upstream 211286 14788919 ~ 14789198 (-)
G99341 NA non-coding upstream 263003 14840636 ~ 14840842 (-)
G99343 NA non-coding upstream 302127 14879760 ~ 14880075 (-)
G99390 NA non-coding upstream 303021 14880654 ~ 14881619 (-)
G99395 NA non-coding upstream 325068 14902701 ~ 14902927 (-)
AMCG00015640 LOC103356187,LOC107382365,LOC107664566,LOC107551445,LOC107556825,LOC101483122,LOC102289392 other downstream 55372 14502764 ~ 14515279 (-)
G99286 NA other downstream 87743 14481194 ~ 14482908 (-)
G99213 NA other downstream 113956 14447711 ~ 14456695 (-)
AMCG00015628 NA other downstream 234322 14294968 ~ 14336329 (-)
AMCG00015612 zdhhc5a,zdhhc5 other downstream 705913 13834517 ~ 13864738 (-)
AMCG00015645 dtx4,dtx1,LOC108426833,LOC105020655,LOC106577571,LOC106608654,LOC107683563 other upstream 103161 14680794 ~ 14738274 (-)
AMCG00015647 NA other upstream 200797 14778430 ~ 14795425 (-)
G99426 NA other upstream 524984 15102617 ~ 15189394 (-)
AMCG00015659 NA other upstream 592982 15170615 ~ 15200791 (-)
AMCG00015660 NA other upstream 672268 15249901 ~ 15252721 (-)

Expression


Co-expression Network