AMCG00015645 (dtx4,dtx1,LOC108426833,LOC105020655,LOC106577571,LOC106608654,LOC107683563)


Basic Information

Item Value
gene id AMCG00015645
gene name dtx4,dtx1,LOC108426833,LOC105020655,LOC106577571,LOC106608654,LOC107683563
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14680794 ~ 14738274 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015645
ATGCTGCTGGCCTCCGCCGTGGTGGTGTGGGAATGGCTGAACGAGCACGGGCGCTGGCGGCCCTACAGCCCGGCCGTGTCGCACCACATCGAGGCGGTGATCCGGGCCAACCCCCGAGGCGGCAGCGTCGTGCTAGGCCAGGTCGACAGCAAGCTCTCGCCCTACATCATAGATCTGCACTCCATGCACCAGTTCCGACAGGACACCGGCACTCTCCGGCCTGTGCGCCGCTCCTTGTACGAGCCCTCCTCGGCTCCAGCACAGGGCTGGCAGTGGGAATGGGAGGGGGACGGTGGGCGATGGACCCCCTATGACACCCAGGTGTCCATCGCCCTGCAGTGCGCGATGGACCGGCAGCTTCCCTGGCTGGACTTGGCACCGCTTGGGTTCTGCTACACCGTGGACCTCCAGAACATGACCCAAGTTAACCAGCAGACCCACAGACGCAGACGGGTCCAACGTCGGTCTGATCAAGCCTACCCCTTGGTGACAGGGGTTGGGGGAGGAGGTGGGGCAGGAGCACgggctgggggagggggtggagcCATGGTGATGGCTatgggtggaggaggaggagcaggaggaggaggaggtgggaaTGTCCAAGCCAGCGCGGGAGCCAATGGCAGCAGTAGCAGTAATGGTGGAAGTGGGTTGGTTGGTGTTAATAGTGGGATTTTCTCCACTGGTGCACTGTCAGCCGCACTGGCCTCCCTGCCTCAGGCCTGTGGCTGCCCACAGTGCATGCTGGTCCTCAGTGTCAAGGCACACTCTCTGGCACACTCTCTGGGTGCCACACAAGGGAGGAAGCCACAGCAACTACAACTACAGCAGCAGCTACAGTTCAAGGCTCCTGTTTCAAAGACTGGTTCCATTTCTGCCACCATTCCTACtcctactactgctgctgcagcCCCCTCCTCCGCCTCTACTGTTGCGGTTgtcaccacctcctcctcttcctcctcctcctcctcctctgcttcctcttcctcttcttactcctcttcctcccgTGCTCCCCCACCGGTCCCTGGTCCCCCGCTGCCCCCTCGATCCAGTCTTGCTGGTCTGAGTCGCCCAGCACTACAGCGCATTGCCATGGCGCAGTCTCGGGCCCTCATAGCCTCAGGGGTGCCCACTGTGCCAGTGAAGAATCTCAATGGTTCCAGCCCTGTTCACCCAGCACTGGCCGGTATCACTGGTATCCTGATGAGTGCCGCAGGGCTGCCCGTGTGCCTAACACGCCCACCGCGGTTGGTGCTGCACCCCCCCCCTGTCAGCAAGAGCGAGGTGAAGCCCGTGCCCGGCCTGGGACACTGCTGCCGCAAGACCAGCAAGAGGCAGGCGCGCCGAGGTAAAACTCCAGAGGAGGTGGTGAAGAAATACCTACAGAAAGTACGCAACCCCCCTGAAGAGGACTGCACTATCTGTATGGAGTCTCTGGTTGGACCCTCCGGCTATAAGGGCCCTGTGGCAGGTGGGGGGTCGCGGGGGGGCGAGCCAGTGGGCAGACTCATGCGCTGTGGCCACCTCTACCACTTACAGGCCATCCGCATCATCTACACCATCCCCCCGGGCATCCAGggtccCGAGCACCCTAACCCAGGGAAGCCCTACACAGCAAGGGGGTTCCCCCGGCACTGCTACCTCCCTGACAACGAGAAGGGCAGGAAGGTGCTGAGGCTACTGCTGGTGGCGTGGGAGCGGCGTCTGGTGTTCTCGGTGGGTACGTCCAGCACCACGGGCGAGTCTGACACTGTGGTGTGGAACGAGGTGCACCACAAGACTGAGTTTGGGTCCAATCTGACCGGCCACGGCTACCCGGACCCAGGCCACCTGGACAACGTCCTGCAGGAGCTCCGCCAGCAGGGCATCTGggcggaggaagaggaggaggaggaggaggaggagggggcggaGGACGAGGGCGAGAGGGGCGGGGAGGAAgaaggcagaggcagagggggGAGGAGGGTTGGGGATAGGGGCAgagaggggtag
>TU124002
CCGTAGCCCACCCTGACGCACAGTGGACGGGCAGTGACAGAAACACTCACAccgtgagggagagagagaaagaaagaaaaaagacaagggCAGAGTCTATGCActcaaatcaaaacagaaatgggTACATAAATGCGTGccaataatgcaaaataatatggAAAACTGGGGACGTCGTTCGGTCCCGTTATCTCTGTAATGGGGGCGTATACATCTTAAAATCAAGGACGAGGTAAAGGAACTGGATCTGGATAAAACGAGTGGTCAGTGAAGTTGCTGGCTGCACTTGTTCAGCTGGTTACTGGTGCTGAACTGACCCGGccgacggacagacagacagacagacagacagacgcggACGCACGGCCACGATTTCGACTCAAATTGGTGTCCGTTGTTCTGGAAAATATTGcatggggaaaaaagaagagtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagaatagtaAAGTTCTATACATCTGAAGAAAGTATTCTGAAATATAGAATtaggcacagagagagaaataaagcgTTTAGTAAGTTTATTCAATGCCGTTCCTGTGACTACCACTACCACTACCCTACTACTACGATACTACTGCTGCTGTCCCTGCAGTTACTTCACTACTGCGGGTTAACTGGCGAGCTCAATGAGACAACTCGCTGCACAGAGACCAGATGGaggggactgagagagagagagagagggagggagagagagagagagacgtgctTATAGTAACTCTCACTGGAGCAAAGTAGCCTATTAGTATTATTTCCATGAGCACCTTCATCGTCGGGGGAGTTGCAACTGATAATTGAAACTGGAcccaaaaaaagagagaatacatgaatgaataaGGAAGTAcatgaacaattaaaaaaaaaaaaaaaacagaaggagaGACCAGTGGGAGTGGATTTCTGTTCGTCGCAAACCAGCCAGTGGAACCGGGCCTGAATGCCGACACCTGtgattttcatgtgtttttaacGTGAGTGGATTTAAAAGACACAATGACAACACGCAGCTTTACatatcgtgtgtgtgtgtggtcgcCCGGACATATATGTAGCGATTGCAAGGTGTTACACATCATACGTGCAGCCTGATCATTTGAGGAAGAAGACGCTTGCATTTgcggatattattattattattattattttgcattttgttcgGAGATTTTGCAAAAGAATTCGACCAGATGAACGGGCAAAACTGTCGCCCTGgatgtttttatgattttgatttttgattATGATTTTTGATCGCagccatcatcataataatccCACACGCGGCTCTTCATCGGCTCTCGCCGGCTCAAGTGACGCCCGAGTCGGGGAGCGCACAAGATGTTCCGGAGAGACATTTTAACACCCATGGAAGAAAGACATTAAAACAACTGGGGTGGTGGTGGAGTGGGGGACTAATACGACAGACGGACACAGAGGAGAGCAAGAGAAATCAAGGCTGACAAAGAGGAATTGCAACCCTGGTGGAAACCAGAGCGAACTCCGCAATTCCGGGGTGGAAATAATTCCCCTGCCTCTCCAGAGCAAGACGCGGGGTTTACACCCGTGTCCGTTCGTGCTTGGGCCAGCTGGGGATCCGTGCTTTTTACTGGACGTGTCCGCTGAACAATGCTGCTGGCCTCCGCCGTGGTGGTGTGGGAATGGCTGAACGAGCACGGGCGCTGGCGGCCCTACAGCCCGGCCGTGTCGCACCACATCGAGGCGGTGATCCGGGCCAACCCCCGAGGCGGCAGCGTCGTGCTAGGCCAGGTCGACAGCAAGCTCTCGCCCTACATCATAGATCTGCACTCCATGCACCAGTTCCGACAGGACACCGGCACTCTCCGGCCTGTGCGCCGCTCCTTGTACGAGCCCTCCTCGGCTCCAGCACAGGGCTGGCAGTGGGAATGGGAGGGGGACGGTGGGCGATGGACCCCCTATGACACCCAGGTGTCCATCGCCCTGCAGTGCGCGATGGACCGGCAGCTTCCCTGGCTGGACTTGGCACCGCTTGGGTTCTGCTACACCGTGGACCTCCAGAACATGACCCAAGTTAACCAGCAGACCCACAGACGCAGACGGGTCCAACGTCGGTCTGATCAAGCCTACC
>TU124012
TGAGGTGAGGgaggaggtgggaaTGTCCAAGCCAGCGCGGGAGCCAATGGCAGCAGTAGCAGTAATGGTGGAAGTGGGTTGGTTGGTGTTAATAGTGGGATTTTCTCCACTGGTGCACTGTCAGCCGCACTGGCCTCCCTGCCTCAGGCCTGTGGCTGCCCACAGTGCATGCTGGTCCTCAGTGTCAAGGCACACTCTCTGGCACACTCTCTGGGTGCCACACAAGGGAGGAAGCCACAGCAACTACAACTACAGCAGCAGCTACAGTTCAAGGCTCCTGTTTCAAAGACTGGGTATCCAACTTCTGCCACCAATTCCAGCCACACCAGgaccctccccctctccttctctctctccagggctCGGGCAGCGGCAGCAGCCACCTCCC

Function

symbol description
dtx1 Predicted to enable transferase activity and zinc ion binding activity. Acts upstream of with a negative effect on Notch signaling pathway. Acts upstream of or within glial cell differentiation and neuron differentiation. Predicted to be located in cytoplasm. Is expressed in nervous system and spinal cord neural tube. Orthologous to human DTX1 (deltex E3 ubiquitin ligase 1).
dtx4 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in Notch signaling pathway and protein ubiquitination. Predicted to be located in cytosol. Predicted to be active in nucleoplasm.

NR:

description
PREDICTED: E3 ubiquitin-protein ligase DTX4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015645 False 2004 mRNA 0.63 10 14680794 14693281
TU124002 True 2148 TUCP 0.51 3 14690870 14695370
TU124012 False 388 TUCP 0.59 2 14690387 14738274

Neighbor

gene id symbol gene type direction distance location
AMCG00015644 NA coding downstream 4802 14672211 ~ 14675992 (-)
AMCG00015641 LOC107382365,LOC104937879,LOC102289392 coding downstream 160508 14517458 ~ 14520286 (-)
AMCG00015635 NA coding downstream 206692 14468361 ~ 14474102 (-)
AMCG00015632 NA coding downstream 234776 14445353 ~ 14446018 (-)
AMCG00015634 ran1,ran,LOC107588340 coding downstream 236636 14436478 ~ 14444158 (-)
AMCG00015649 NA coding upstream 183038 14921312 ~ 14928105 (-)
AMCG00015651 NA coding upstream 201772 14940046 ~ 14943540 (-)
AMCG00015652 NA coding upstream 210969 14949243 ~ 14955830 (-)
AMCG00015655 NA coding upstream 355846 15094120 ~ 15108025 (-)
AMCG00015658 NA coding upstream 497860 15236134 ~ 15244894 (-)
G99289 NA non-coding downstream 56308 14542961 ~ 14624486 (-)
G99296 NA non-coding downstream 76817 14538671 ~ 14603977 (-)
G99302 NA non-coding downstream 117568 14562178 ~ 14563226 (-)
G99217 NA non-coding downstream 216634 14458465 ~ 14464160 (-)
G99162 NA non-coding downstream 462010 14062419 ~ 14218784 (-)
G99332 NA non-coding upstream 50645 14788919 ~ 14789198 (-)
G99341 NA non-coding upstream 102362 14840636 ~ 14840842 (-)
G99343 NA non-coding upstream 141486 14879760 ~ 14880075 (-)
G99390 NA non-coding upstream 142380 14880654 ~ 14881619 (-)
G99395 NA non-coding upstream 164427 14902701 ~ 14902927 (-)
AMCG00015642 LOC102792555 other downstream 103161 14570651 ~ 14577633 (-)
AMCG00015640 LOC103356187,LOC107382365,LOC107664566,LOC107551445,LOC107556825,LOC101483122,LOC102289392 other downstream 165515 14502764 ~ 14515279 (-)
G99286 NA other downstream 197886 14481194 ~ 14482908 (-)
G99213 NA other downstream 224099 14447711 ~ 14456695 (-)
AMCG00015628 NA other downstream 344465 14294968 ~ 14336329 (-)
AMCG00015647 NA other upstream 40156 14778430 ~ 14795425 (-)
G99426 NA other upstream 364343 15102617 ~ 15189394 (-)
AMCG00015659 NA other upstream 432341 15170615 ~ 15200791 (-)
AMCG00015660 NA other upstream 511627 15249901 ~ 15252721 (-)
G99454 NA other upstream 521187 15259461 ~ 15260484 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G499601 NA unknown CI01000344 null 651860 ~ 668146 (-)