AMCG00015660


Basic Information

Item Value
gene id AMCG00015660
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 15249901 ~ 15252721 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015660
AAACCGGAAGCAAGCTGCAGCCAGACCGAGGCGGAAGTTCCGTGGTTTCGACGGACTGTTGACATCAGGGAACGACGCTgctccgtctgtctgtctctctctctctcatcctcccTTCCCTCGCATTCCATCCCATCCCTTCATCTCTCTATCAGTTTACTCCTCCTTTCGCCTCCCTTTGGCACCACACCGGCGACACAACCCAGAGACCCAGCGGccgagggaggaagaggaggtggTGGAGGACGAGAGGGACACCGCCACGGCGACCGCCCAGTCTCTACGCCCCTCCGTCGCCCCGGAGACGGGGGAGGAGGATGTTGCTGTGGG
>TU124192
CGGAAGCAAGCTGCAGCCAGACCGAGGCGGAAGTTCCGTGGTTTCGACGGACTGTTGACATCAGGGAACGACGCTgctccgtctgtctgtctctctctctctcatcctcccTTCCCTCGCATTCCATCCCATCCCTTCATCTCTCTATCAGTTTACTCCTCCTTTCGCCTCCCTTTGGCGTTTCTACTCTCTTTTTCTGCCTGATACCACTCTCTCGCTcgtcagtttatttatttatttatttatttatttatttatttatatattaactttCGCAAACTACAAAGAATAAGTACACAAtagACCACACCGGCGACACAACCCAGAGACCCAGCGGccgagggaggaagaggaggtggTGGAGGACGAGAGGGACACCGCCACGGCGACCGCCCAGTCTCTACGCCCCTCCGTCGCCCCGGAGACGGGGGAGGAGGATGTTGCTGTGGGGGGCGTGAGTTGTGGTGCTCATGGCGAGGGGGGCATTGCCACGACGACCACCTTCTGCCTGGGCACCACTGGAGCA
>TU124193
CGGAAGCAAGCTGCAGCCAGACCGAGGCGGAAGTTCCGTGGTTTCGACGGACTGTTGACATCAGGGAACGACGCTgctccgtctgtctgtctctctctctctcatcctcccTTCCCTCGCATTCCATCCCATCCCTTCATCTCTCTATCAGTTTACTCCTCCTTTCGCCTCCCTTTGGCGTTTCTACTCTCTTTTTCTGCCTGATACCACTCTCTCGCTcgtcagtttatttatttatttatttatttatttatttatttatatattaactttCGCAAACTACAAAGAATAAGTACACAAtaggtaattattattattattattattattattattattattattattatgactagcTGGCATACGTATTAGCAGCATCCGTATTAGTATTGTTGATATTTCGGGACAGTGTTTTGAGGTGCGTGTTAGCTGTGACGTCATGTCCCCACTAGTTTTTTAATAAGTTCCTTGTTTTGTCCGTTTGTATTATATtcatacaaatatgaataatactTATTAGCTATGtttgatgttttgtgtgtttgtataagAGTGCGTGTCTAAATATACAGGTAAGCtcgtgtaattattatttttactatggCTATTTCTGCTTATAGCACTACTGCTGCTGTTTTATTGCTACATTCTCCATTCTCTCGCCTCCCCCCACAcctcctcatctctctctctctctctcagtgcagtgttattgtactgtatttttcaaTCTATgtctatactgtactatattaaccctctctatttctctctcgtGCAAATCCCTTATTTACATTCTCTATTCAAAATTGCTCTCTATCCCTGTGACAAATGTACAAGGTGACAGAGGcagtaaatatatactgtaaataaacagtctctttctctctcggtattaatgtactgtagtgtccagtcagtcagtccaaATGCACTTTACAGGGCAGTCAGCATTAATGTACTGTGGTAtctagtcagtcagtgtgccctACTGTATTATACCACAGTGTCCTATTAAACTCTGCCACACTATACTACACAATACTGTGCCATGCTATACTGCACTATAGTATACAACTGTATACTATCCTATACtttactgcactatactatagtGTATTAACCCATATCTTACactaatatactgtattatgaCACACTAACCACCCTGCCTTCTCTCTCCTAACCTCCTTTATTTTCCCAATCCCAACAGTATACTaaactacactgtactatactacactgtattaAGGTATACAATACTGTACAATACGCACTGGCACTCAggttcagacacacacactgaccttgagatacagataaacacacaaagacacactttAAGATACACACCCTGACCCTAAGACACAGACTCACACCTCAGCCACACCTACCCCACGCACAACCGCGTCAATCACAACAGCTTCACAACTAGTGCACTCGGCCATTtccacaaccacaacaacagcGCAACAAGCTGCGTGACTTGTGTAGCAACACACAAGGGTGCACTCCTCATCAAAGCAACTGTCGCACAACAGACCACACCGGCGACACAACCCAGAGACCCAGCGGccgagggaggaagaggaggtggTGGAGGACGAGAGGGACACCGCCACGGCGACCGCCCAGTCTCTACGCCCCTCCGTCGCCCCGGAGACGGGGGAGGAGGATGTTGCTGTGGGGGGCGTGAGTTGTGGTGCTCATGGCGAGGGGGGCATTGCCACGACGACCACCTTCTGCCTGGGCACCACTGGAGCA
>TU124194
CGGAAGCAAGCTGCAGCCAGACCGAGGCGGAAGTTCCGTGGTTTCGACGGACTGTTGACATCAGGGAACGACGCTgctccgtctgtctgtctctctctctctcatcctcccTTCCCTCGCATTCCATCCCATCCCTTCATCTCTCTATCAGTTTACTCCTCCTTTCGCCTCCCTTTGGCGTTTCTACTCTCTTTTTCTGCCTGATACCACTCTCTCGCTcgtcagtttatttatttatttatttatttatttatttatttatatattaactttCGCAAACTACAAAGAATAAGTACACAAtagTATACTaaactacactgtactatactacactgtattaAGGTATACAATACTGTACAATACGCACTGGCACTCAggttcagacacacacactgaccttgagatacagataaacacacaaagacacactttAAGATACACACCCTGACCCTAAGACACAGACTCACACCTCAGCCACACCTACCCCACGCACAACCGCGTCAATCACAACAGCTTCACAACTAGTGCACTCGGCCATTtccacaaccacaacaacagcGCAACAAGCTGCGTGACTTGTGTAGCAACACACAAGGGTGCACTCCTCATCAAAGCAACTGTCGCACAACAGACCACACCGGCGACACAACCCAGAGACCCAGCGGccgagggaggaagaggaggtggTGGAGGACGAGAGGGACACCGCCACGGCGACCGCCCAGTCTCTACGCCCCTCCGTCGCCCCGGAGACGGGGGAGGAGGATGTTGCTGTGGGGGGCGTGAGTTGTGGTGCTCATGGCGAGGGGGGCATTGCCACGACGACCACCTTCTGCCTGGGCACCACTGGAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015660 False 330 mRNA 0.62 2 15249977 15252721
TU124192 False 526 lncRNA 0.55 2 15249901 15252717
TU124193 True 1764 lncRNA 0.43 2 15249901 15252717
TU124194 False 854 lncRNA 0.51 2 15249901 15252717

Neighbor

gene id symbol gene type direction distance location
AMCG00015658 NA coding downstream 5007 15236134 ~ 15244894 (-)
AMCG00015655 NA coding downstream 141876 15094120 ~ 15108025 (-)
AMCG00015652 NA coding downstream 294071 14949243 ~ 14955830 (-)
AMCG00015651 NA coding downstream 306361 14940046 ~ 14943540 (-)
AMCG00015649 NA coding downstream 321796 14921312 ~ 14928105 (-)
AMCG00015662 NA coding upstream 85315 15338036 ~ 15339062 (-)
AMCG00015664 NA coding upstream 302444 15555165 ~ 15557776 (-)
AMCG00015667 NA coding upstream 539792 15792513 ~ 15814359 (-)
AMCG00015672 NA coding upstream 805081 16057802 ~ 16060001 (-)
AMCG00015676 NA coding upstream 999698 16252419 ~ 16272647 (-)
G99424 NA non-coding downstream 67915 15053296 ~ 15181986 (-)
G99430 NA non-coding downstream 123230 15124635 ~ 15126671 (-)
G99412 NA non-coding downstream 197371 14995538 ~ 15052530 (-)
G99411 NA non-coding downstream 253137 14992906 ~ 14996764 (-)
G99410 NA non-coding downstream 266329 14981291 ~ 14983572 (-)
G99476 NA non-coding upstream 61432 15314153 ~ 15314453 (-)
G99513 NA non-coding upstream 312405 15565126 ~ 15565391 (-)
G99516 NA non-coding upstream 379674 15632395 ~ 15632608 (-)
G99535 NA non-coding upstream 501095 15753816 ~ 15754026 (-)
G99565 NA non-coding upstream 626697 15879418 ~ 15883521 (-)
AMCG00015659 NA other downstream 49110 15170615 ~ 15200791 (-)
G99426 NA other downstream 60507 15102617 ~ 15189394 (-)
AMCG00015647 NA other downstream 454476 14778430 ~ 14795425 (-)
AMCG00015645 dtx4,dtx1,LOC108426833,LOC105020655,LOC106577571,LOC106608654,LOC107683563 other downstream 511627 14680794 ~ 14738274 (-)
AMCG00015642 LOC102792555 other downstream 672268 14570651 ~ 14577633 (-)
G99454 NA other upstream 6740 15259461 ~ 15260484 (-)
AMCG00015666 NA other upstream 434921 15687642 ~ 15703290 (-)
G99605 NA other upstream 764862 16017583 ~ 16102456 (-)
G99646 NA other upstream 969044 16221765 ~ 16222155 (-)
AMCG00015681 NA other upstream 1214578 16467299 ~ 16473177 (-)

Expression


Co-expression Network