AMCG00015767


Basic Information

Item Value
gene id AMCG00015767
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 20622793 ~ 20656527 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015767
ATGGCGGATAACGCGGTCTGTCCCCCATTTCTGCTGGGGAAACCCCGCTATGACCAGAGCTCGTTCTACGGCAGACTGAGACACTTCGTAGACATCATTGATCCACGGACTCTCTTCGTGTCAGAGGTCAAAGCACAAATGGCTCCCGCAGTCCGGCAGGAGCTgatgtctctttctctgtctgtggtTAAAACAGGCGAGGGGAGCCTCCTGTGGTGTGTTAACAGCCTGTCTTTTAAGGTGTTGGATGAAGGAGTGAAACTGAGCCACTCTGTCCCCGAGGCTGTGCTCTCCTGCTGCAGGCTAATTAAAGCTGGGCTCTGGGCTAGCCGCCTGAAAGAGTGTTTGAAGCTGCTGGATGATTTCAAACATGGGACGCTTCCCCCTGGGGTCTCCGATGCACAGCTCTGGGAAGCTCAGAAGATCAAGCAGGTTGTGGGCCTCCTGCTGCCCAACCAGACCCTGGCATCCACTGTGTTTTGGCAGTGGCTGAACCAGAGTCACAATGCGTGCGTCAACTATGCAAACAGGAATGCTTCCAAGcctACGCCAGCATCCAAGTTCATTCAGGGATACACAGGAGCTGTGACCAGTGCAGTCTCCATAGCGgtgGGCCTCAATTTGCTGATCCGGAGGGCCAACAAGTTCAGTCCATCAACCCGGGTTCTGATCCAGAGGTTCGTGCCCTTCCCAGCTGTGGAGGGCATCGATGTGTTGGACTCCAATGGAAATATCGTGGGCTCTTCCAAAATCGCTGCAAAACATTCCTACAGGAGGCTAGTCCTCCCAGTCCACAGCCTGGTCTGTCTCGCTGCCTTTGGCCTTGCCCTGCCACTTGCCATCAGCCTCTTCCCACAGATGTCCCAG

Function

GO:      GO:0044765

KEGG:

id description
K23503 SFXN5; sideroflexin-5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015767 True 867 mRNA 0.55 11 20622793 20656527

Neighbor

gene id symbol gene type direction distance location
AMCG00015766 NA coding upstream 3023 20586870 ~ 20619770 (+)
AMCG00015768 LOC106565696 coding upstream 66538 20555875 ~ 20556255 (+)
AMCG00015765 NA coding upstream 121361 20484887 ~ 20501432 (+)
AMCG00015759 NA coding upstream 322935 20274943 ~ 20299858 (+)
AMCG00015758 NA coding upstream 397704 20184189 ~ 20225089 (+)
AMCG00015773 smyd5 coding downstream 104303 20760830 ~ 20774620 (+)
AMCG00015775 NA coding downstream 146170 20802697 ~ 20802933 (+)
AMCG00015774 NA coding downstream 146470 20802997 ~ 20803854 (+)
AMCG00015779 NA coding downstream 390243 21046770 ~ 21053142 (+)
AMCG00015781 atrn coding downstream 500627 21157154 ~ 21224579 (+)
G100349 NA non-coding upstream 295626 20324610 ~ 20327167 (+)
G100241 NA non-coding upstream 840030 19726572 ~ 19782763 (+)
G100232 NA non-coding upstream 909549 19712887 ~ 19713244 (+)
G100145 NA non-coding upstream 1454959 19133064 ~ 19167834 (+)
G100143 NA non-coding upstream 1497289 19120828 ~ 19125504 (+)
G100461 NA non-coding downstream 122819 20779346 ~ 20780467 (+)
G100483 NA non-coding downstream 171801 20828328 ~ 20828614 (+)
G100502 NA non-coding downstream 407523 21064050 ~ 21065385 (+)
G100507 NA non-coding downstream 650079 21306606 ~ 21310605 (+)
G100568 NA non-coding downstream 1157844 21814371 ~ 21814715 (+)
G100338 herc3 other upstream 354508 20267407 ~ 20268285 (+)
AMCG00015725 smad1 other upstream 1850827 18744887 ~ 18771966 (+)
G100007 NA other upstream 2296889 18320056 ~ 18325904 (+)
AMCG00015703 rps3a,LOC106592945 other upstream 3491018 17098459 ~ 17131775 (+)
AMCG00015687 NA other upstream 4124262 16494692 ~ 16498531 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other downstream 2022310 22678837 ~ 22683895 (+)
G101061 NA other downstream 4208562 24865089 ~ 24865552 (+)
G101248 NA other downstream 5607388 26263915 ~ 26264308 (+)
G101275 NA other downstream 5716626 26373153 ~ 26377699 (+)
G101400 NA other downstream 7234025 27890552 ~ 27992014 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007502 sfxn5b coding NC_007125.7 CM002898.2 45306073 ~ 45335712 (+)