AMCG00015906 (si:ch211-15e22.3,galntl6,LOC107734540,LOC107598754,LOC106610159,LOC107676688)


Basic Information

Item Value
gene id AMCG00015906
gene name si:ch211-15e22.3,galntl6,LOC107734540,LOC107598754,LOC106610159,LOC107676688
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 28756095 ~ 28777061 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015906
ATGAGCAGGGCTAGATGCGATCGGCAAGGACGAAAACCTGGTAAAGGGGAGCATGGGAAGCCTTATCCACTCACCGAGGAAGAGTGTGATGACTCGGCCTACAGAGAGAATGGCTTCAACATATATGTCAGTAACAACATCGCCCTGGATCGCTCTCTCCCAGATATTAGACACCCGAATTGCAAGCAGAAGCTGTACTTGGAAAAACTGCCGAACACCAGCATCATCATTCCCTTCCATAATGAAGGATGGTCCTCTCTGCTGAGAACAGTGCACAGTATTTCCCACCGAACCCCCGATCACCTCATCGCAGAAATCATTCTCGTGGATGACTTTAGCGACCGGGATCTGAAACGCAACGATCGGCACGGACCACCCTGGATCCCCCGGAATGTAAAAGCGGAGCGTATCAAttga

Function

symbol description
galntl6 Predicted to enable carbohydrate binding activity and hexosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human GALNTL6 (polypeptide N-acetylgalactosaminyltransferase like 6).

NR:

description
polypeptide N-acetylgalactosaminyltransferase-like 6

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015906 True 417 mRNA 0.51 4 28756095 28777061

Neighbor

gene id symbol gene type direction distance location
AMCG00015905 galntl6,si:ch211-15e22.3,LOC107670789 coding downstream 100824 28646331 ~ 28655271 (-)
AMCG00015903 LOC106610173 coding downstream 123296 28618576 ~ 28632799 (-)
AMCG00015904 galnt7 coding downstream 147645 28590771 ~ 28608450 (-)
AMCG00015898 NA coding downstream 325604 28421004 ~ 28430491 (-)
AMCG00015899 NA coding downstream 335442 28420035 ~ 28420653 (-)
AMCG00015907 NA coding upstream 86799 28863860 ~ 28870244 (-)
AMCG00015909 NA coding upstream 342916 29119977 ~ 29127756 (-)
AMCG00015910 NA coding upstream 359358 29136419 ~ 29144911 (-)
AMCG00015920 uso1 coding upstream 817103 29594164 ~ 29619723 (-)
AMCG00015925 NA coding upstream 898496 29675557 ~ 29680079 (-)
G101388 NA non-coding downstream 1086340 27669432 ~ 27669755 (-)
G101369 NA non-coding downstream 1985827 26768207 ~ 26770268 (-)
G101318 NA non-coding downstream 2180885 26574385 ~ 26575210 (-)
G101317 NA non-coding downstream 2181808 26574066 ~ 26574287 (-)
G101309 NA non-coding downstream 2230365 26523659 ~ 26525730 (-)
G101571 NA non-coding upstream 431236 29208297 ~ 29269160 (-)
G101660 NA non-coding upstream 803788 29580849 ~ 29638632 (-)
G101728 NA non-coding upstream 1198332 29975393 ~ 29975724 (-)
G101828 NA non-coding upstream 1559026 30336087 ~ 30339728 (-)
G101855 NA non-coding upstream 1969508 30746569 ~ 30746808 (-)
G101456 NA other downstream 498363 28161837 ~ 28257732 (-)
AMCG00015891 wdr17 other downstream 686219 28041563 ~ 28069876 (-)
AMCG00015892 spcs3,LOC106602378 other downstream 758418 27986755 ~ 27997677 (-)
G101067 NA other downstream 3755205 24992953 ~ 25000890 (-)
AMCG00015825 LOC106569940,LOC107700648,LOC107717728,LOC108274877,LOC107565247 other downstream 5009392 23743790 ~ 23746703 (-)
G101540 NA other upstream 327168 29104229 ~ 29106160 (-)
AMCG00015936 med28,LOC107702388 other upstream 1386212 30163273 ~ 30168350 (-)
AMCG00015942 NA other upstream 1616990 30394051 ~ 30396307 (-)
G101853 NA other upstream 1864133 30641194 ~ 30724429 (-)
AMCG00015950 tll1,LOC107745060 other upstream 2241550 31018611 ~ 31085062 (-)

Expression


Co-expression Network