AMCG00015909


Basic Information

Item Value
gene id AMCG00015909
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 29119977 ~ 29127756 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015909
ATGGACGACCCCAGGCTGAAGGGCAAAATACAGAGCTACACCGCCGTGAACACCTTCTACCACGAAACCTGCCAGGAGGTGGCCCAGCTCAAGCAGCAGCTCTACCAGAGGGACAACACCATCGCGGACCTGGCGGCGCGGCTGGGCAGATACGAAAGCACGGCCGTGTCTGCGGGCGCCGAGGAGCCCGTGGAGATGCAGACGCTGCAGCAACAGCTGAGGGAAAAGGAGCAGGAGATCCAGAGGATGATGAGCCGGCCACAGCACGAGAAAGACCTGGAGATCATGCAGCTGCGGCGCACTGTGGATGAGAGGGACCGGGTTCAGGCCACCCGGGTGGTCCTGTGTCACTCCCTGGCTGAGGAGGCGGACCAGCTGCGCACCCAGCTGGGCACCACGGTGGGGGTGTGTCAGCAGCTCATGCACAAGCTGGAGCAGAGGCAACAGTTTGGAGACTCTGAAGAGGCCCATCTTCGCTCTGAACCCCCCAAAGAGTGTGGGGACGCCTCCAGGATGGCTCAGCTTGAAGCAGTAATTTGCGAGctacaagaagaaaacaaatccctgAAACACAAAGTGGCCTATGTGGAGAGCCTAAATGCTAAATGGCAGAAGTACGATTCTAGTCGGGAAGAGTACGTGAAGGGCCTGTTCCAGAAGCTGAAGCAGTCAAATCCCCAGGCTGGATTAGTGCCAGTGCCCACCAACAGCAGCCTGATGCAGCAGGAGATTCGGAGACTCAACCGCCTCCTGGAGGAAAAGATGAAGGACTGCAGCAGTGTGAGCAAGCAGCTGGAAGAGAGCAGGAAGAGGGACAGCGAGCGGATTCAGATGCTTGAGCAGCAGGTGCTGATCTATGCAGACGACTTTAAATCTGAGCGAGCCGATCGAGAGAGGGCTCAAAGCAAGATTCAGGACCTGCAGGACGAGATCCTCCGCCTGCAGCTGCAGATCAGAAGACAGGACTCGAGAGATCAAGCCGCCTCTTGCCGAATTCGGCTCGGGAACCTGACCGTCATGCACGTGGAAACAGAGGCGGCCGACCCCCTGCAGCGGAGCAGCCCCGATCCGCCAGGACCGAGCAGACCCAACAGCCAGGCTCCTCAAGACTTGGCACTCGCTGTCAGGACTGAGCGCAGAGCCATGACTGACCTGCAGTGCCCGCGCTGCCTCACCACGTACAACGACGACCAGACCGCAGAGTTCCTGAAGCATTGTACGGACTGCGCCGAGTTGTGACAGGAAGAAGGGCGGCTGTCACAGCGAAGGGCCAAGGAACCAGAGGAGTAAAGCACTACATGAACTGGCTGTTGGTGCAGCGGGAGACGTCCGTGACACTGCTGCGGCCAGGGAAAGACAGTATTGACACTCTGACAGGTGGTCGTTTTCCGCTACGGACTGTGACCGGTCTGCCAGCTCTATTCTTCACGGTCTCTTGTCTGTTCCTTAAAGGTGGAGGCAAGTCTGTTCATGCAAACAGGTGGACTTCCACCTCATTCTCTACGTGAACGTCTTTCTATCCTTGAGCCATTCTTGTTGGGTTGGACATGTGTCTGTTATGTTAAGGGTATGTTATTCTTCTCTTACCCCAAATGTTAAAActgagggtttttttttttttatattgtaaaaaaactGACACTGTCCTTGgacagatatttaattaattattcaaaaaaTCAATCTGTAACAAGATATACCTCATATTCAACTCTAGTGTTGGTACAGGTTGGCTCATttctataaatacattctaTCCACCCAAGtcttttaaactattttgcactttttgtttgtacagtgtatgtttaattatacaatattatttattttttcttttatgtataCAGAAGCTGTTTTGTCTTGTTCGTTTAGGTTTAACCTTTCTAAATGCTGGTGCTGTTTGTGTTAATATTGTAAGATAGTAACACATTTTTCCGGgagattttcttttctgcaaAGAGAGCGTTTGtcaaaagcagacatttttcaTAGTTTGCGTTTTGCTTTTGTAAGGTTACTGACTCACTCATTTCTTACAAAGAAAATAGACCAGCCAGCATCTGGCTTTTAACTGTCTATGCATATGTGATTTCCATTGTAAATTCAACTTACCAATAGGAAAGAAGTGAGCTGCAAAATTTAAAGATTTCAAACATACTGAACAACAAATCTAACAGTATTATTGAGACCATTGGTAGATCTATGGATTGGATCCTTTTTTGCActaaactttttaatttatatttttttacctcaaactaattattgatttacatttacaatgtaCCACATGTATGCatgatattgtatttaaaataatatttttataataaaatgttgcaaCATTGTAAGCAGTGGAATTTGCTCATTGATGGCAAAGATAGTTGATGCAGCCACATAAACAGGGATGCTTGCTATAATACAGGCTTCTATCATTTCACCCTTTTGTTATCCAGAAAGGTAGCTGTGGCTTTAACATTGGGAGGGCTTGTGACAGGTTCAAAGACGTGCTTAATGTGGTTAAGGCGTTTTctgtttaaagaaagaaaaacgtATGAACACAGACACTGTGCTTGTAAGCTGCGATTTCACACCCTAGCAGAAGTGGTTGTGCAACTAATGGAAATTCCCATCCTTTACTGCATTGTGTTATGGCTGCTGCAACGAAGTACAAATTCTTATCTGATAATAACCTTGCTGCTTTAAAACACTGACTGAAGATAAGTGGGCTATAAGGAGTAGCTCAGTTTGCGTTCATTGTCCAGACATGTGGTGATCCACAGAAGAGCAAAAACATCCCCAGTACACCACAATGCTATCCTTGTGGTTATGGCAGCTTAGGGCTTGTTTCCTCATGGTTTGAGCAGAGGGATTACACGTGAGGTTTTGTTTGTAGGGAAATAACAGAGTGTCTCGTACAGTACTGAAGCAATAGACCTGTATTGCTGGAAGATGATTCAGTCTCAGGCCGAGTTATGACATCAGTGGCAGGCCCCTAGATTGGAAAGTTGGTTTGTATCACACAGGCCAATAACAACTGTATTAGTACTGGAGTGTTATACTAATGACTGAATGTGAATTTGAATagtggtatttgtattttattaagaaacTAAACTTTTTTTGCAGATGTTCAtctctttttttcccatttacattttcaggcACACTACTTAAAGCACGTTCATTTCGATTAATCATTGAACAGGGTGCAAACATACGTACGGGTGATGGCATAAAGAGAACCTGCAAAGCAACGCTAGAAAGTCAAAAGTCAGATAATGAGATAAAAAACTAACCGGACAACTGGTTATAGTTTTGCGGCTTCAACTTGGAAGACGCTGTGTCTACAGAACACCAAAGCTGCCGAATCCTCAAAACACCCCAGTCCTGTAAGAGAGGGAATCGATGTGAGAGCAGGACAAAAAAATCCGCAGTCCACAAAGACGTGTGTTGCTATTGATCAAGTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015909 True 3475 mRNA 0.46 6 29119977 29127756

Neighbor

gene id symbol gene type direction distance location
AMCG00015907 NA coding downstream 249733 28863860 ~ 28870244 (-)
AMCG00015906 si:ch211-15e22.3,galntl6,LOC107734540,LOC107598754,LOC106610159,LOC107676688 coding downstream 342916 28756095 ~ 28777061 (-)
AMCG00015905 galntl6,si:ch211-15e22.3,LOC107670789 coding downstream 464706 28646331 ~ 28655271 (-)
AMCG00015903 LOC106610173 coding downstream 487178 28618576 ~ 28632799 (-)
AMCG00015904 galnt7 coding downstream 511527 28590771 ~ 28608450 (-)
AMCG00015910 NA coding upstream 8663 29136419 ~ 29144911 (-)
AMCG00015920 uso1 coding upstream 466408 29594164 ~ 29619723 (-)
AMCG00015925 NA coding upstream 547801 29675557 ~ 29680079 (-)
AMCG00015924 NA coding upstream 552927 29680683 ~ 29696689 (-)
AMCG00015923 ppm1k coding upstream 578219 29705975 ~ 29722947 (-)
G101388 NA non-coding downstream 1450222 27669432 ~ 27669755 (-)
G101369 NA non-coding downstream 2349709 26768207 ~ 26770268 (-)
G101318 NA non-coding downstream 2544767 26574385 ~ 26575210 (-)
G101317 NA non-coding downstream 2545690 26574066 ~ 26574287 (-)
G101309 NA non-coding downstream 2594247 26523659 ~ 26525730 (-)
G101571 NA non-coding upstream 80541 29208297 ~ 29269160 (-)
G101660 NA non-coding upstream 453093 29580849 ~ 29638632 (-)
G101728 NA non-coding upstream 847637 29975393 ~ 29975724 (-)
G101828 NA non-coding upstream 1208331 30336087 ~ 30339728 (-)
G101855 NA non-coding upstream 1618813 30746569 ~ 30746808 (-)
G101540 NA other downstream 13817 29104229 ~ 29106160 (-)
G101456 NA other downstream 862245 28161837 ~ 28257732 (-)
AMCG00015891 wdr17 other downstream 1050101 28041563 ~ 28069876 (-)
AMCG00015892 spcs3,LOC106602378 other downstream 1122300 27986755 ~ 27997677 (-)
G101067 NA other downstream 4119087 24992953 ~ 25000890 (-)
AMCG00015936 med28,LOC107702388 other upstream 1035517 30163273 ~ 30168350 (-)
AMCG00015942 NA other upstream 1266295 30394051 ~ 30396307 (-)
G101853 NA other upstream 1513438 30641194 ~ 30724429 (-)
AMCG00015950 tll1,LOC107745060 other upstream 1890855 31018611 ~ 31085062 (-)
AMCG00015955 klhl2,LOC107745059,LOC107548347,LOC107655955 other upstream 2043683 31171439 ~ 31193425 (-)

Expression


Co-expression Network