AMCG00015923 (ppm1k)


Basic Information

Item Value
gene id AMCG00015923
gene name ppm1k
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 29705975 ~ 29722947 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015923
CATCAATTGGCACACGCCCCGCCCCCGGCACTCACAACACAGACCCCACCGGCGGCGGCGGCAGAGACTGCGCGTACCTGAGCCCTGCGCTTCCCGCAGAGCAGCACTCCGCACACCGAGGGACCCGCCCAGTCCGGCCCGAGCACATCCTTGCCTGTGTGAGGCAAAGCGTGCCAGCTTTGTTCGAGACAGGAATCCAGGTTTCAACAGTCAGCTGGTCCACCCGGGAAGCCGAGTGAGTTATGTTACCGTCTTCATTCTTTTACCTGATCCGGTCCGGTGGGTTTCAAGTGCGCAGACGGGCCCTCCTGGTTTCCAAAAAAGCGCTGCAAGAGGACAGACGTCTCTTCCACTGCGTGTCCACCACCAAGCTCAGCAACTCAAGGTTTGACCCGGACGGGAGTGGGCGGCCGACCACATGGGATGCCTTCGGGATCTGGGATAACCGCATTGATGAGCCCATCTTGCTGCCGCCAAGCATCAAGTATGGCAAACCCATTCCAAAGGTCAGTCTGTCCAAAGTGGGCTGTGCCTCACAGATTGGCAAGCGCAAAGAGAACGAGGATCGCTTCAAGGCCTCGCAGTTGACCGACAACATCCTGTACTTCGCTGTGTACGACGGACATGGTGGCCCAGCGGCGGCAGACTTCTGTCACAAGTATATGGAGAAATACATCAAGGATCTAGTGACTGAGGACGAGAACCTGGAGCGCGTTTTGACTGAAGCGTTCCTTGAAATTGACAAGGCTCTGGGCAGACACATACACTTCTCCGCTGATGCGACCCTGCTGAGCGCCGGCACCACTGCCACCGTGGCCCTGCTGAGAGACGGCATCGAGCTGGTGGTGGCCAGTGTGGGCGACAGCCGGGCCCTGCTGTGCCGCAAGGGGAAGGCCTACAAGTTGACAGTGGACCACACGCCCGAGAGGAAGGACGAGAAGGACAGGATCAAAAAGAGTGGGGGCTTCGTGGCCTGGAACAGCCTGGGTCAGCCCCACGTGAACGGCAGGCTGGCCATGACGCGCAGCATCGGTGACTTCGACCTGAAGCGCACGGGCCTGCATCACGCTCATGACACATTCCTGGCCCTGACCACAGACGGCATCAACTTCATCATGAACAGCCAGGAGATCTGTGACGTCATCAACCAGTGCCACGACCCATGGGAGGCGGCCGAGGTGATCTCCGAGCAGgcCCTTCAGTACGGCTCAGAGGACAACAGCACCATCATCGTGGTCCCGTTCGGCGCCTGGGGGAAGCAGAAGAGCTCAGACGTCAGCTTTTCCTTCAGCCGGAGCTTCGTCTCCAGCGGGAGATGGGCGTAGAGGTGCGATGCGGCCTCTAGGCCATTGTGCAATAGAGTCTGTATGCAGCACACTGCCGCTGTGAAGCGGGGAGCTTTaaaccattcatttatttatttcctaaaaTGACCTAATAGAGGCTACCAAACCAGGACCCCCCCCCTACTGTAGGGCATCATTCTGAATGAAGGAGTGAGGGATGAGTACTAGCCTATACTGAAGGCATGATCAAAGGGAACAATCTTTTTCTCCATGGCACTTGATATCTCAGTGAAAATAATGCAAGCTGCCTAGAAAACCTAATGAAATCCATCTGGGAAAGGAGGAATAATTTTGCTGAAAGCTCGGCTTCCTACAAACGCTGCCCCAGTATTTATGGTCTACGTGTCCCGTCACATCCTTTTCAATGTGATGTCGCACCTTTTCACCATCTCCAGTTTGTACACCAGCAAGACGACCCCAAATTGTCGCACTCCCAGCCACCTGTTAGAGGGCAGATATTTCGCAGCACTCGGACCGTCTTTTGCCTGGGTCTGTTGCGGTAAAAGGTGAAGATGTGTCCACAGTGGTAACGGAGGTGAAACTCCATGGCATATGATAGAAATATTTTCGTTGGAGATTAATGTTATTTCCCATCAGCTAATGGGTTGTGAACCATGTTCTCCTTTCCCAGAAGGGTTTCCGTTAGCTTTTCAGGTTGCCTCATAACTTTGGACAGTCAGTCTTTCTTGAGTGTATGtgtaagtgtttgtgtgtgcggaagtggttgttgttttttgcaaataAGCTGAGTATCATTGCCCACTAAGACATGGCATACGAGTTATATAAATGTACCTCCTTGTTTATGAACACTGAAGTAGTGCAGAAACCACGCCAGAGTAGAGAAGTGTATTCACTTTTATAGATCAGCCTCTTTTACCTCATTGGCAGCAGAAAAAGGTCAGAGAGCTGACGCACTGGGTGTGGAGGTGCGTCGTGACAGATAAGGGGGTTCATATTGTGTCTGAGTGGCTCTGACAGAGCTGGCAAATTAACGATTGCATTTAAACCCACAAAACAAGGCACAAGCTTGTGAATCACAGATGTGAAGTATATTTGAAACTGGCGGTGTTTCATGAGGAGGAAAAGGGGAGCATTGGCAGTGAAGGCTTTGGCGGGAGAGAAGGTGTATGTTTCATAGGACACGCCAGATGTGCGTTTCGAATTGTCTGCGCTGGAGATTGATCGCAGAAACTGACTGTACAGTCCTGATGCTCCAAAGTGCTTTGCACACAGATCTTTCGTATTTGTATAAtatgaactgtatatatattaatatttatacattttgtcacCAGGCAAAACAATGCTGCTGTTTTagtacaatatatttgtatatatgtggtCCTTGTAAATGTCTCTCTCTGGGTGGGGAGAACACAACTCACACAACGCTTCAGTTCCTAACCGCTGCCAGCTGTGTGGCTCGAGTCTCTTTAACACGGtgtgtttgaaattattttgtaatcgCAGAATGCTCCACAGCGGCTTATGATGTCTAgttttaacacaattttaagCTACATATTGTGAATCCCAGAACAACAGTACTTCATCAATAGATGGATATTCTGGACACTCATTTTGAACAATGGGTTTGAGTGTTTATTAGGTATGTTTGGATTGCTTAATCCCAGGCTACAAATGCTCCCACacctgattttgtatttattttaaaaaagggatGTTTAAACCATAACACTTGAAACATTCGAAAATGTGTTGGTGtagtttttaaatggaaaagcgCACAGACTTAACAAGACTCAAGTCGTTTGCTTCCCAGTGCTTAGACACCTCTCGCAAAACTGACTCCGGTGCAgtttattaattgttaattatgaAACTGCTAAACCGATTTCTTCTGTCCGGGTAATGTTCAGTCGGCTGAGGTCTTGGAATCGGTCAAACACTAGCAAATCAACCATCAGCTTTATTTCAtagtgaattaattattttagaaagcgtcgcatttatttatttttaaatgtggactttttaattattaagtgTTTGTTTCCTGGTCAACAACTGTTTAGTTTGACAGCTTGAACTTAGTAAATGCACTTTGAGCTGGTTTCTCAAACCTAGATTAGAGTCCTAGTCTGGGATtaccctacctaaaataacattgcgAGAGTTTAAGAATAATGCTAAGCGGGGTTTGTGAATCCAGCCCATAAAATCACCAGCTATTGAACGCCACTGGATGTTGACGtgatgtcagtgctgtgtggtTTCCAGAGTAAGCAAGTGTTGCTGCTAGAATTGGGGTCTGTTTACAGATCACAAACCTGGCGTGTTTATCTGACCTTCCCCTGGAACTCACCTGGTCTAAAATCATTGACGTCTTTGGCCATTCTTATCTACACAGTATTGACAGCCAGCCAGTGTGCTGAGAAAACAACATACAGTGCAGGAAAAGATGTGCAAGTAATAGGAAAAAGCTTTAATCTGGTCAgttgttaaaacaaattaataaaaaaataaaaaaaaagtgaattttccAACACAATGTGATTCTGGGAAATGGGAAATCATACAGGAAGTCAAACTGAGTTGAAGTTGATTTCCATTAAACAATGCACCAATGCACAAAGCACAAAAGTAGAAATTGGActactgttttaatgttaatataatgtttgtttttaccccCACCagacaatttcaaaaataattctACAAAAGAGTGTACTAATGTGCACTAAAATTGCTTGTTGGGTTTTACATTTTGGAGTATTCTACCATCTTTGTTGCCATGCATAACCATGTAAAGTACCAGGCAAGGCATGTTTGGGCCTTTTACCAGGACTAGATAATTCTACTCTGAGGTCACTGTCAGCTTTACAGCGTGCGATGGTGTTACGTGTTATTCTGTAAACCTTGTGGAGGCATTATGGCAGTTTGCTCCTGTCTTGCTAACTGGACACTGGCGCGATGACACAATCTGTGAAGACACTCCCTAAAACATGGAAGAATTGTGTAAATATTGTGTTACAAAAGAGAAGATGTATGTTTGGACTAAggtttctcaaaataaaaatttaacaaattaaaaaata

Function

symbol description
ppm1k Predicted to enable metal ion binding activity; protein serine phosphatase activity; and protein threonine phosphatase activity. Predicted to be involved in protein dephosphorylation. Located in mitochondrion. Implicated in maple syrup urine disease.

NR:

description
PREDICTED: protein phosphatase 1K, mitochondrial

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0031016 pancreas development biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0048565 digestive tract development biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0001889 liver development biological_process
GO:0007420 brain development biological_process
GO:0046872 metal ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K17505 PPM1K, PP2CM; protein phosphatase 1K

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015923 True 4411 mRNA 0.46 7 29705975 29722947

Neighbor

gene id symbol gene type direction distance location
AMCG00015924 NA coding downstream 9286 29680683 ~ 29696689 (-)
AMCG00015925 NA coding downstream 25896 29675557 ~ 29680079 (-)
AMCG00015920 uso1 coding downstream 86252 29594164 ~ 29619723 (-)
AMCG00015910 NA coding downstream 561064 29136419 ~ 29144911 (-)
AMCG00015909 NA coding downstream 578219 29119977 ~ 29127756 (-)
AMCG00015926 NA coding upstream 42461 29765408 ~ 29769425 (-)
AMCG00015927 slit2,LOC107700301,LOC107695646 coding upstream 53832 29776779 ~ 29826448 (-)
AMCG00015934 NA coding upstream 389610 30112557 ~ 30124600 (-)
AMCG00015933 NA coding upstream 427742 30150689 ~ 30161616 (-)
AMCG00015935 LOC107550873,LOC107756464,LOC107680669,LOC107694980,LOC107601489 coding upstream 445764 30168711 ~ 30175061 (-)
G101660 NA non-coding downstream 67343 29580849 ~ 29638632 (-)
G101571 NA non-coding downstream 436815 29208297 ~ 29269160 (-)
G101388 NA non-coding downstream 2036220 27669432 ~ 27669755 (-)
G101369 NA non-coding downstream 2935707 26768207 ~ 26770268 (-)
G101318 NA non-coding downstream 3130765 26574385 ~ 26575210 (-)
G101728 NA non-coding upstream 252446 29975393 ~ 29975724 (-)
G101828 NA non-coding upstream 613140 30336087 ~ 30339728 (-)
G101855 NA non-coding upstream 1023622 30746569 ~ 30746808 (-)
G101859 NA non-coding upstream 1031940 30754887 ~ 30760424 (-)
G101911 NA non-coding upstream 1169381 30892328 ~ 30970887 (-)
G101540 NA other downstream 599815 29104229 ~ 29106160 (-)
G101456 NA other downstream 1448243 28161837 ~ 28257732 (-)
AMCG00015891 wdr17 other downstream 1636099 28041563 ~ 28069876 (-)
AMCG00015892 spcs3,LOC106602378 other downstream 1708298 27986755 ~ 27997677 (-)
G101067 NA other downstream 4705085 24992953 ~ 25000890 (-)
AMCG00015936 med28,LOC107702388 other upstream 440326 30163273 ~ 30168350 (-)
AMCG00015942 NA other upstream 671104 30394051 ~ 30396307 (-)
G101853 NA other upstream 918247 30641194 ~ 30724429 (-)
AMCG00015950 tll1,LOC107745060 other upstream 1295664 31018611 ~ 31085062 (-)
AMCG00015955 klhl2,LOC107745059,LOC107548347,LOC107655955 other upstream 1448492 31171439 ~ 31193425 (-)

Expression


Co-expression Network