AMCG00015926


Basic Information

Item Value
gene id AMCG00015926
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 29765408 ~ 29769425 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015926
AGTTTGGGATCCTCGGCGTGGGAATGTCAGCTCCCCCCCGCAGGAAGCCCGGGCCCCCGGACCAGAGATCCAGATCTGCACCTCTGACCTGCGCCCCCCCATCTCTCACCAGGACCCGCGCCAAGCCCAGCGACCAGCTGAACCCCAGGACCGTGGACCCTTTCAGCAGCACAGGCAAGTGCCCGTCTGCCTTCTCCGCCATCTACTCCAAGGGAGACATCCCCTGCAGGTTAGTCCATGGATCCGTCAGACACAAGCTGCAGTGGGACTCTCCCCCAGAAACCCTCCAGTTTGACCCTCTGCTCGTGACCCTCGCAGAGGGCCTGAGAGAAACGAAGCACCCGTACACCTTCCTGTCTCGGGAAGGCTTCCGGGAGCTGCTCCTCGTCCACCGGGCCGCCGAGAAAGCCACGCCACTGCTGCCCAGGCTGGTGCCGGCGCTGAAGGCGGCTCTGGCCCATTCGGACGCCGGGGTGTTTGAGAGGGGGCTGAACGGCCTGGTCCAGCTGAGTGAGGCTCTCTCAAGGAGACTGATGGACAAGCAGTGTAAAGAGAAGGTGATCGGCGCCCTGCAGAGACTGGAGGCGCACGGGGGGCAGGGAAGTCTGGCCGTTATCAAGTCCAAGATCCCAACCTACAGCTCCGTGTGCTGAAGAGAAGAGCAGCGCAGCGGAGGTGCAGGATCGCCCTTCTGTACAGGGGGTCATTGCATCAGGCCATACGTGGAAGCTGagctgtttttattcattttatgctgttttattttagtcttcttttcttttttgttccccAAGTGCAGAgttgatataaaataaagtgaaaagtgtt

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko03430 Mismatch repair

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015926 True 828 mRNA 0.59 7 29765408 29769425

Neighbor

gene id symbol gene type direction distance location
AMCG00015923 ppm1k coding downstream 42461 29705975 ~ 29722947 (-)
AMCG00015924 NA coding downstream 68719 29680683 ~ 29696689 (-)
AMCG00015925 NA coding downstream 85329 29675557 ~ 29680079 (-)
AMCG00015920 uso1 coding downstream 145685 29594164 ~ 29619723 (-)
AMCG00015910 NA coding downstream 620497 29136419 ~ 29144911 (-)
AMCG00015927 slit2,LOC107700301,LOC107695646 coding upstream 7354 29776779 ~ 29826448 (-)
AMCG00015934 NA coding upstream 343132 30112557 ~ 30124600 (-)
AMCG00015933 NA coding upstream 381264 30150689 ~ 30161616 (-)
AMCG00015935 LOC107550873,LOC107756464,LOC107680669,LOC107694980,LOC107601489 coding upstream 399286 30168711 ~ 30175061 (-)
AMCG00015939 LOC107591586,LOC104943831 coding upstream 585091 30354516 ~ 30364976 (-)
G101660 NA non-coding downstream 126776 29580849 ~ 29638632 (-)
G101571 NA non-coding downstream 496248 29208297 ~ 29269160 (-)
G101388 NA non-coding downstream 2095653 27669432 ~ 27669755 (-)
G101369 NA non-coding downstream 2995140 26768207 ~ 26770268 (-)
G101318 NA non-coding downstream 3190198 26574385 ~ 26575210 (-)
G101728 NA non-coding upstream 205968 29975393 ~ 29975724 (-)
G101828 NA non-coding upstream 566662 30336087 ~ 30339728 (-)
G101855 NA non-coding upstream 977144 30746569 ~ 30746808 (-)
G101859 NA non-coding upstream 985462 30754887 ~ 30760424 (-)
G101911 NA non-coding upstream 1122903 30892328 ~ 30970887 (-)
G101540 NA other downstream 659248 29104229 ~ 29106160 (-)
G101456 NA other downstream 1507676 28161837 ~ 28257732 (-)
AMCG00015891 wdr17 other downstream 1695532 28041563 ~ 28069876 (-)
AMCG00015892 spcs3,LOC106602378 other downstream 1767731 27986755 ~ 27997677 (-)
G101067 NA other downstream 4764518 24992953 ~ 25000890 (-)
AMCG00015936 med28,LOC107702388 other upstream 393848 30163273 ~ 30168350 (-)
AMCG00015942 NA other upstream 624626 30394051 ~ 30396307 (-)
G101853 NA other upstream 871769 30641194 ~ 30724429 (-)
AMCG00015950 tll1,LOC107745060 other upstream 1249186 31018611 ~ 31085062 (-)
AMCG00015955 klhl2,LOC107745059,LOC107548347,LOC107655955 other upstream 1402014 31171439 ~ 31193425 (-)

Expression


Co-expression Network