AMCG00015942


Basic Information

Item Value
gene id AMCG00015942
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 30394051 ~ 30396307 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015942
GGCAGGGGCGCCATCCTGTACAATGACAGCTTCCGGCCCGATCCCGGAAGTCTTCCCTGCGTGTTGCCGGCTGGGAGCAGCGCAGCCCTGAGCCCGCCGCCATCACCATACAGCCCGGGTTACACCGGGAATAACGGCATACACCCCGGGTTACCGGCAGGCAGTGAGCATGGCGTGCCCGGGCGCTGCGGGTCCAGAGGAGCGGTTGGCGGGTGTAAACCGCGGCTGTGGGTGACGTTTCAGCGCGACGGACCGACGGATGCGGTCGAGTTGGATGCAAGTCTGGATGGACAGGCTCAGTGTAACTGTGTGAAGCCGGCCGTGTTCGGCAGGTCAGGGTGTCGGCGGTCAGGAATGCGGGGTCAATATTTGAGGTGCGCAGAGCTCGACAAATACCAGCCGGGGACCCTGTCTGCAGCTTGTGCGATTGTTTGATTTTCTCAAGACCGGCTGAGAGGAGGACgtgctggtttttatttttcttgcttgcTTGAAATATCCAGAACTTTTTTGTATGAAACCTGAATGGAGATTGGAGGCAATCTGTTTATAACCTGCTGTCAACTGCACAGCCCAGCTGCTGTTCTTCTTCCAgggttgtgtttcagtgctgctGTGATGTAACGTGTCCACTTGGTGGCGCATGGTGCTTTGAGATGGTTTCTGAAATCTGTGCTTAACAGCATTTCCCAAATCAACCTGATTCTTTGTTTTCCCCCTCAAACCcttgatttattatattgtttatgttcCTCCTTCCTAAACCCTCAACTTAATGCTCATCATACTAGTTTACCCCAAAACTACTGAGTGTTaactatctctgtctctctctctctcatataaaGAGATCCACTCCAGCTTGTAAGGTTTCTGGTTTAATCCTTCATTTGTACCTCGACTCTAGAACACTTTGTAAAGGTGACGGAGGAGgaggcaaaataaaaaccttttacaATGGCC
>TU127183
GCCGGCTGGGAGCAGCGCAGCCCTGAGCCCGCCGCCATCACCATACAGCCCGGGTTACACCGGGAATAACGGCATACACCCCGGGTTACCGGCAGGCAGTGAGCATGGCGTGCCCGGGCGCTGCGGGTCCAGAGGAGCGGTTGGCGGGTGTAAACCGCGGCTGTGGGTGACGTTTCAGCGCGACGGACCGACGGATGCGGTCGAGTTGGATGCAAGTAAATGACTGGGCGATGCATTGAACCACAGTAATGCAGTTATCAGTGCTCATATTCCTCACCTGTTGGTTTATAACTCTGCAGGTCTGGATGGACAGGCTCAGTGTAACTGTGTGAAGCCGGCCGTGTTCGGCAGGTCAGGGTGTCGGCGGTCAGGAATGCGGGGTCAATATTTGAGGTGCGCAGAGCTCGACAAATACCAGCCGGGGACCCTGTCTGCAGCTTGTGCGATTGTTTGATTTTCTCAAGACCGGCTGAGAGGAGGACgtgctggtttttatttttcttgcttgcTTGAAATATCCAGAACTTTTTTGTATGAAACCTGAATGGAGATTGGAGGCAATCTGTTTATAACCTGCTGTCAACTGCACAGCCCAGCTGCTGTTCTTCTTCCAgggttgtgtttcagtgctgctGTGATGTAACGTGTCCACTTGGTGGCGCATGGTGCTTTGAGATGGTTTCTGAAATCTGTGCTTAACAGCATTTCCCAAATCAACCTGATTCTTTGTTTTCCCCCTCAAACCcttgatttattatattgtttatgttcCTCCTTCCTAAACCCTCAACTTAATGCTCATCATACTAGTTTACCCCAAAACTACTGAGTGTTaactatctctgtctctctctctctcatataaaGAGATCCACTCCAGCTTGTAAGGTTTCTGGTTTAATCCTTCATTTGTACCTCGACTCTAGAACACTTTGTAAAGGTGACGGAGGAGgaggcaaaataaaaaccttttacaATGGCCACaa
>TU127184
GCCGGCTGGGAGCAGCGCAGCCCTGAGCCCGCCGCCATCACCATACAGCCCGGGTTACACCGGGAATAACGGCATACACCCCGGGTTACCGGCAGGCAGTGAGCATGGCGTGCCCGGGCGCTGCGGGTCCAGAGGAGCGGTTGGCGGGTGTAAACCGCGGCTGTGGGTGACGTTTCAGCGCGACGGACCGACGGATGCGGTCTGGATGGACAGGCTCAGTGTAACTGTGTGAAGCCGGCCGTGTTCGGCAGGTCAGGGTGTCGGCGGTCAGGAATGCGGGGTCAATATTTGAGGTGCGCAGAGCTCGACAAATACCAGCCGGGGACCCTGTCTGCAGCTTGTGCGATTGTTTGATTTTCTCAAGACCGGCTGAGAGGAGGACgtgctggtttttatttttcttgcttgcTTGAAATATCCAGAACTTTTTTGTATGAAACCTGAATGGAGATTGGAGGCAATCTGTTTATAACCTGCTGTCAACTGCACAGCCCAGCTGCTGTTCTTCTTCCAgggttgtgtttcagtgctgctGTGATGTAACGTGTCCACTTGGTGGCGCATGGTGCTTTGAGATGGTTTCTGAAATCTGTGCTTAACAGCATTTCCCAAATCAACCTGATTCTTTGTTTTCCCCCTCAAACCcttgatttattatattgtttatgttcCTCCTTCCTAAACCCTCAACTTAATGCTCATCATACTAGTTTACCCCAAAACTACTGAGTGTTaactatctctgtctctctctctctcatataaaGAGATCCACTCCAGCTTGTAAGGTTTCTGGTTTAATCCTTCATTTGTACCTCGACTCTAGAACACTTTGTAAAGGTGACGGAGGAGgaggcaaaataaaaaccttttacaATGGCCACaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015942 False 963 mRNA 0.52 4 30394055 30396307
TU127183 True 986 lncRNA 0.50 3 30394051 30396242
TU127184 False 886 lncRNA 0.51 3 30394051 30396242

Neighbor

gene id symbol gene type direction distance location
AMCG00015939 LOC107591586,LOC104943831 coding downstream 29075 30354516 ~ 30364976 (-)
AMCG00015935 LOC107550873,LOC107756464,LOC107680669,LOC107694980,LOC107601489 coding downstream 218990 30168711 ~ 30175061 (-)
AMCG00015933 NA coding downstream 232435 30150689 ~ 30161616 (-)
AMCG00015934 NA coding downstream 269451 30112557 ~ 30124600 (-)
AMCG00015927 slit2,LOC107700301,LOC107695646 coding downstream 567603 29776779 ~ 29826448 (-)
AMCG00015943 ndst3,LOC105903540,LOC107551574,LOC107754165,LOC107750457 coding upstream 4069 30400376 ~ 30419717 (-)
AMCG00015944 LOC108439183,LOC105903540,LOC107591550,LOC107750457,LOC108260488,LOC107551574 coding upstream 41190 30437497 ~ 30450154 (-)
AMCG00015945 NA coding upstream 69061 30465368 ~ 30472428 (-)
AMCG00015946 NA coding upstream 352727 30749034 ~ 30766107 (-)
AMCG00015947 ugt8,LOC107591551,LOC107745064,LOC107656191,LOC106595509 coding upstream 407782 30804089 ~ 30823051 (-)
G101828 NA non-coding downstream 54323 30336087 ~ 30339728 (-)
G101728 NA non-coding downstream 418327 29975393 ~ 29975724 (-)
G101660 NA non-coding downstream 755419 29580849 ~ 29638632 (-)
G101571 NA non-coding downstream 1124891 29208297 ~ 29269160 (-)
G101388 NA non-coding downstream 2724296 27669432 ~ 27669755 (-)
G101855 NA non-coding upstream 350262 30746569 ~ 30746808 (-)
G101859 NA non-coding upstream 358580 30754887 ~ 30760424 (-)
G101911 NA non-coding upstream 496021 30892328 ~ 30970887 (-)
G101996 NA non-coding upstream 1428128 31824435 ~ 31824696 (-)
G102020 NA non-coding upstream 1556601 31952908 ~ 31953648 (-)
AMCG00015936 med28,LOC107702388 other downstream 225701 30163273 ~ 30168350 (-)
G101540 NA other downstream 1287891 29104229 ~ 29106160 (-)
G101456 NA other downstream 2136319 28161837 ~ 28257732 (-)
AMCG00015891 wdr17 other downstream 2324175 28041563 ~ 28069876 (-)
AMCG00015892 spcs3,LOC106602378 other downstream 2396374 27986755 ~ 27997677 (-)
G101853 NA other upstream 244887 30641194 ~ 30724429 (-)
AMCG00015950 tll1,LOC107745060 other upstream 622304 31018611 ~ 31085062 (-)
AMCG00015955 klhl2,LOC107745059,LOC107548347,LOC107655955 other upstream 775132 31171439 ~ 31193425 (-)
G101939 NA other upstream 871097 31267404 ~ 31287793 (-)
G101963 NA other upstream 1232941 31629248 ~ 31629566 (-)

Expression


Co-expression Network