AMCG00015943 (ndst3,LOC105903540,LOC107551574,LOC107754165,LOC107750457)


Basic Information

Item Value
gene id AMCG00015943
gene name ndst3,LOC105903540,LOC107551574,LOC107754165,LOC107750457
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 30400376 ~ 30419717 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015943
atCAGCATCTTCATGACCCACTTGTCCAACTATGGGAATGACCGGCTGGGCCTGTACACCTTTGCAAACCTGGCCAACTTCGTTCAGTGCTGGACCAACCTCAACCTGCACACGCTGCCCCCGGTCCAGCTGGCCCACAAGTACTTCCAGCTCTTCCCCGAACAGAAGGACCCACTCTGGCAGAACCCTTGCGATGACAGAAGGCACAAGGATATTTGGTCGAAGGAAAAGACGTGTGACCGGCTGCCCAAATTCCTGGTGGTCGGACCCCAGAAAACAGGAACCACAGCCCTGTATCTCTTCCTGATCATGCATCCTTCGATCACCAGCAATTTCCCCAGTTTGAGGACATTTGAGGAAGTCCAGTTCTTCAACGGCAACAACTACCACAAAGGCATTGACTGGTACATGGACTTCTTCCCTGTCCCCTCCAACATAACCACGGACTTCCTGTTCGAAAAGAGTGCCAACTACTTCCCCTCGGAGGACGCGCCCAAGCGAGCCGCTGCCCTCATACCCAAGTCCAAGATCATCACCCTGCTCATCAACCCCTCAGACCGCGCCTACTCTTGGTACCAGCACCAACGAGCCCACGAGGACCACGCCGCCCTGAAATACAGCTTCTATGAGGTGATCACCGCAGGGCACCATGCCCCCTCCGAGCTGCGGTCACTGCAGAACAGGTGTCTGGTTCCGGGCTGGTATGCCATCCACATCGAGCGCTGGCTGACACACTTTCCTGCGTCCCAGCTGCTGATCATCGATGGGCAGCAGCTGAGGAACGACCCTGCGGCCGTCATGGATGAGGTCCAGAAGTTTCTAGGAGTCTCTCCCTATTACAACTACTCCCAGGCCCTGACGTTTGATCCCCAGAAGGGATTTTGGTGTCAGCTCCTTGAAGGAGGGAAAACGAAATGCCTGGGAAAAAGCAAGGGCAGGAAATACACCGCCATGGACTCGGAGTCCAGGGCCTTCCTCTCCAGATACTTCAAGGACCACAACATCGAACTGTCCAAGCTGCTGCACAGACTGGGCCAGCCGCTGCCCTCCTGGCTGCGCGAGGAGCTGCAGAAGGTCAGATAGCGCTGACGGCCGAGggtccgagagagagagaggactcgCTTTTCCCCTGGACTCGAGAGGAATCCTCCAGCGACCGCCTCGACAATTGGGATTcgtcttttgtttttcagaggggatcgttttttttttaagaccaaCCTCTccgggaagggagagaggaatCCCCGTGCGATGTTCTCCATGTGCTGGCATGTGGTATGACAGAGGCCTGTGGGGGCCAGGTCGGGCCCATCGGGGGCGACAACCCCGTCTGGCGGCCCCCGCACGACGGCCGTGAGAAGGACCGGCACAGGCACACGCTTGTGTCCACGACTTTAATTTATGACTCCAGTGCAGTGCTGGTCAGCTGTCTGGTTTCGGTGGTGATGATTTGCACTAAGTTTCGCTCCTCACTGACGCACTGGGTGTTTCTTCTTATATGTGTAGAGAGAGATATCGGATCAAACATGCGGCCGAGCTCCGGACCGGGACGGGCGGGGAGTCCGACGTCGACACGGACACTTTGTTTCTTCTGGGACGATATTTAAATCGAgcggcttttgtttttctcgtTTCTCCGGCCACTCTTCTCACGATCACTCTGCACCGAGACTCGCTCGCCGTCTCTGCATCTTTCCGTTTCCTCCTtcactttctccttttttttaattcgaTGATCTGGAAAGAAGAGTAAAGGAGCTTCGTGTTGTACAATGACCTGCAGagctatatgtgtgtgtgttttttttttatatctgtaCAAAGACACAATAAAAGCGTCACACAGCACATTGTAGAGGTGGGGGACACAATTAGAGGTGTTTTTATTGTCACACGGTTAGACTTCACAATGTGACCTCCCGAAAACAGATACTTGATCCTGCATTTTATACGGAAATGTTGCTTTACAATACGATGCAAAACCATTTGCGGTAGTTTCTGTTGAACTGTAAATGCTAAGCGCACAACACAGCCGTTATGAGTTcaggtatttttatttaattacaacgAAAGGCCTTAATGACATTCATAGCTCTGATCCTTTCATTTGTTAATTCGACTCCAGATGTTTTAGAAGTGTATCTGCTCTGAGTGCAGAGATACCTTTTCATAACTTTGAAACCAGCAACCGAAgaatatctatatttatttttacatcttgCCCTTCTCAGCATAAACGATCTGGTTGTCTATGAGTCACACACTTTTGCTCTTCTTGGCCAGTATGTTTTCATCCAGATAAATGGTGGTTCTCAATCGACTCAACGAAGGAGGTTTCAAGATCTAAACAACACAAGTAGGTCTGAAAATGTGCACAACCTTCTATTATCCCCGAATTGTCCAATTTTAGATCATTTAAGAATAAAATCTCCCCCCTGGACACcaaggaatatatatttttatgtaccATATAGAAGAATCCGTCCAACTCATACCAAACACTGTTTCCATCGCCAGTTTCCATTCCTAGCGCTCTGAGTTGCTTTTTATAGTTTcctgcaattttgtttttattttattttattttattttggtcagTATTCTCCTCAATGCAGAACTGTAATGCTTCAACAGAGTGTGTATTCAATAAACACCGAACTGTTTAACATTTTAGA

Function

symbol description
ndst3 Predicted to enable [heparan sulfate]-glucosamine N-sulfotransferase activity and deacetylase activity. Predicted to be involved in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in central nervous system; dermis; neural rod; olfactory placode; and pectoral fin. Orthologous to several human genes including NDST4 (N-deacetylase and N-sulfotransferase 4).

NR:

description
PREDICTED: bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function
GO:0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015943 True 2678 mRNA 0.49 8 30400376 30419717

Neighbor

gene id symbol gene type direction distance location
AMCG00015939 LOC107591586,LOC104943831 coding downstream 35400 30354516 ~ 30364976 (-)
AMCG00015935 LOC107550873,LOC107756464,LOC107680669,LOC107694980,LOC107601489 coding downstream 225315 30168711 ~ 30175061 (-)
AMCG00015933 NA coding downstream 238760 30150689 ~ 30161616 (-)
AMCG00015934 NA coding downstream 275776 30112557 ~ 30124600 (-)
AMCG00015927 slit2,LOC107700301,LOC107695646 coding downstream 573928 29776779 ~ 29826448 (-)
AMCG00015944 LOC108439183,LOC105903540,LOC107591550,LOC107750457,LOC108260488,LOC107551574 coding upstream 17780 30437497 ~ 30450154 (-)
AMCG00015945 NA coding upstream 45651 30465368 ~ 30472428 (-)
AMCG00015946 NA coding upstream 329317 30749034 ~ 30766107 (-)
AMCG00015947 ugt8,LOC107591551,LOC107745064,LOC107656191,LOC106595509 coding upstream 384372 30804089 ~ 30823051 (-)
AMCG00015948 NA coding upstream 432104 30851821 ~ 30866786 (-)
G101828 NA non-coding downstream 60648 30336087 ~ 30339728 (-)
G101728 NA non-coding downstream 424652 29975393 ~ 29975724 (-)
G101660 NA non-coding downstream 761744 29580849 ~ 29638632 (-)
G101571 NA non-coding downstream 1131216 29208297 ~ 29269160 (-)
G101388 NA non-coding downstream 2730621 27669432 ~ 27669755 (-)
G101855 NA non-coding upstream 326852 30746569 ~ 30746808 (-)
G101859 NA non-coding upstream 335170 30754887 ~ 30760424 (-)
G101911 NA non-coding upstream 472611 30892328 ~ 30970887 (-)
G101996 NA non-coding upstream 1404718 31824435 ~ 31824696 (-)
G102020 NA non-coding upstream 1533191 31952908 ~ 31953648 (-)
AMCG00015942 NA other downstream 4069 30394051 ~ 30396307 (-)
AMCG00015936 med28,LOC107702388 other downstream 232026 30163273 ~ 30168350 (-)
G101540 NA other downstream 1294216 29104229 ~ 29106160 (-)
G101456 NA other downstream 2142644 28161837 ~ 28257732 (-)
AMCG00015891 wdr17 other downstream 2330500 28041563 ~ 28069876 (-)
G101853 NA other upstream 221477 30641194 ~ 30724429 (-)
AMCG00015950 tll1,LOC107745060 other upstream 598894 31018611 ~ 31085062 (-)
AMCG00015955 klhl2,LOC107745059,LOC107548347,LOC107655955 other upstream 751722 31171439 ~ 31193425 (-)
G101939 NA other upstream 847687 31267404 ~ 31287793 (-)
G101963 NA other upstream 1209531 31629248 ~ 31629566 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_00508138_00537134 NDST1 coding CI01000006 null 507188 ~ 537134 (-)