AMCG00015944 (LOC108439183,LOC105903540,LOC107591550,LOC107750457,LOC108260488,LOC107551574)


Basic Information

Item Value
gene id AMCG00015944
gene name LOC108439183,LOC105903540,LOC107591550,LOC107750457,LOC108260488,LOC107551574
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 30437497 ~ 30450154 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015944
ATGCAGAACCTGCTCCGGACCCAGATCACCAACTTCACGTTCAACCTGGGCTTCTCGGGGAAGTTCTACCACACCGGGACGGAGGAGGAAGACGAGGGGGACGACCTCCTGCTGAAGTATGTGGACGAGTTCTGGTGGTTCCCCCACATGTGGAGCCACATGCAGCCGCACCTGTTCCACAACGAGTCCTCGCTGATGGAGCAGATGgAGCACGGCATCCCCACGGACATGGGGTACGCGGTGGCGCCGCACCACTCGGGCGTCTACCCGGTGCACGTGCAACTGTATGAGGCCTGGAAGAAAGCCTGGAACATCAGGGTGACGAGCACGGAGGAGTACCCCCACCTGAAACCGGCGCGCTACCGGAAGGGCTTCGTCCACAACAGCATCATGGTACTTCCCCGGCAAACCTGCGGCCTCTTCACACACACCATCTTCTACAAGGAGTATCCTGGAGGCCCCAAGGAGCTGGACAAGAGCATCCGAGGAGGGGAGCTTTTTCTCACCGTGCTGCTGAACCCG

Function

NR:

description
PREDICTED: bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4-like isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function
GO:0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015944 True 522 mRNA 0.61 4 30437497 30450154

Neighbor

gene id symbol gene type direction distance location
AMCG00015943 ndst3,LOC105903540,LOC107551574,LOC107754165,LOC107750457 coding downstream 17780 30400376 ~ 30419717 (-)
AMCG00015939 LOC107591586,LOC104943831 coding downstream 72521 30354516 ~ 30364976 (-)
AMCG00015935 LOC107550873,LOC107756464,LOC107680669,LOC107694980,LOC107601489 coding downstream 262436 30168711 ~ 30175061 (-)
AMCG00015933 NA coding downstream 275881 30150689 ~ 30161616 (-)
AMCG00015934 NA coding downstream 312897 30112557 ~ 30124600 (-)
AMCG00015945 NA coding upstream 15214 30465368 ~ 30472428 (-)
AMCG00015946 NA coding upstream 298880 30749034 ~ 30766107 (-)
AMCG00015947 ugt8,LOC107591551,LOC107745064,LOC107656191,LOC106595509 coding upstream 353935 30804089 ~ 30823051 (-)
AMCG00015948 NA coding upstream 401667 30851821 ~ 30866786 (-)
AMCG00015951 LOC106594914 coding upstream 672514 31122668 ~ 31130956 (-)
G101828 NA non-coding downstream 97769 30336087 ~ 30339728 (-)
G101728 NA non-coding downstream 461773 29975393 ~ 29975724 (-)
G101660 NA non-coding downstream 798865 29580849 ~ 29638632 (-)
G101571 NA non-coding downstream 1168337 29208297 ~ 29269160 (-)
G101388 NA non-coding downstream 2767742 27669432 ~ 27669755 (-)
G101855 NA non-coding upstream 296415 30746569 ~ 30746808 (-)
G101859 NA non-coding upstream 304733 30754887 ~ 30760424 (-)
G101911 NA non-coding upstream 442174 30892328 ~ 30970887 (-)
G101996 NA non-coding upstream 1374281 31824435 ~ 31824696 (-)
G102020 NA non-coding upstream 1502754 31952908 ~ 31953648 (-)
AMCG00015942 NA other downstream 41190 30394051 ~ 30396307 (-)
AMCG00015936 med28,LOC107702388 other downstream 269147 30163273 ~ 30168350 (-)
G101540 NA other downstream 1331337 29104229 ~ 29106160 (-)
G101456 NA other downstream 2179765 28161837 ~ 28257732 (-)
AMCG00015891 wdr17 other downstream 2367621 28041563 ~ 28069876 (-)
G101853 NA other upstream 191040 30641194 ~ 30724429 (-)
AMCG00015950 tll1,LOC107745060 other upstream 568457 31018611 ~ 31085062 (-)
AMCG00015955 klhl2,LOC107745059,LOC107548347,LOC107655955 other upstream 721285 31171439 ~ 31193425 (-)
G101939 NA other upstream 817250 31267404 ~ 31287793 (-)
G101963 NA other upstream 1179094 31629248 ~ 31629566 (-)

Expression


Co-expression Network