AMCG00015952


Basic Information

Item Value
gene id AMCG00015952
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 31150641 ~ 31154111 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015952
atgaaGAGCCTGAGCGCGGGGCTGGCGCTGCTGTGCGGGGCGCTGGCGGCGCTGGCGGCGCTGGCGGCGGCCGGGGAGCAGCAGCCGGAGGAGGACATCTCCTTCGAGTACCACCGCTACGAGGAGCTGCGCAAGGCGCTGGTGTCGGTGTGGCTGCAGTGCCAGTCCATCAGCCGCATCTACACCATCGGCCAGAGCTTCGAGGGCCGGGAGCTGCTGGTGCTGGAGCTGTCCGGCAACCCGGGCGGGCATGAGGCCGACATGCCCAGAGCGATGGCTGTGAACGCCGGACGGCCGCGGCCAGTTTCCTCCACGTCCACGGGAGCCGCGGCACATCGAAGAGCAGACACTGTGCGCTGGGAGGTGTGGAGCATCTGGGTGCTGAATATTTCAGGCCGACGTCAGAACAACGACCCGGTAGCAGGCAGGGGGGAGCGCCTCGATCGACACCCGTGCGTGGTCCGCACGGCTCGGCAGCGCTGTGGTCAACGCGGCTCTGTGCGCTCCTCCGCTCTGACTCACTCACTCGGCCAGATGGGCTCCCACTGTGGGAAGGGACTCCGGGCCCCAGGCGACCGCTCGGCTCCCTCGCCGGCTGAGCGCTGGCTGCATGACGAGAGAGGCCCAGTGAGCCGGGCTGAGCCGCGCTGA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015952 True 651 mRNA 0.69 3 31150641 31154111

Neighbor

gene id symbol gene type direction distance location
AMCG00015951 LOC106594914 coding downstream 19685 31122668 ~ 31130956 (-)
AMCG00015948 NA coding downstream 283855 30851821 ~ 30866786 (-)
AMCG00015947 ugt8,LOC107591551,LOC107745064,LOC107656191,LOC106595509 coding downstream 327590 30804089 ~ 30823051 (-)
AMCG00015946 NA coding downstream 384534 30749034 ~ 30766107 (-)
AMCG00015945 NA coding downstream 678213 30465368 ~ 30472428 (-)
AMCG00015954 msmo1 coding upstream 9857 31163968 ~ 31171317 (-)
AMCG00015956 NA coding upstream 84896 31239007 ~ 31240666 (-)
AMCG00015957 NA coding upstream 334046 31488157 ~ 31519717 (-)
AMCG00015958 fstl5 coding upstream 431825 31585936 ~ 31590808 (-)
AMCG00015961 NA coding upstream 592917 31747028 ~ 31766366 (-)
G101911 NA non-coding downstream 179754 30892328 ~ 30970887 (-)
G101859 NA non-coding downstream 390217 30754887 ~ 30760424 (-)
G101855 NA non-coding downstream 403833 30746569 ~ 30746808 (-)
G101828 NA non-coding downstream 810913 30336087 ~ 30339728 (-)
G101728 NA non-coding downstream 1174917 29975393 ~ 29975724 (-)
G101996 NA non-coding upstream 670324 31824435 ~ 31824696 (-)
G102020 NA non-coding upstream 798797 31952908 ~ 31953648 (-)
G102092 NA non-coding upstream 1208352 32362463 ~ 32362863 (-)
G102149 NA non-coding upstream 1376160 32530271 ~ 32530594 (-)
G102234 NA non-coding upstream 1510661 32664772 ~ 32681331 (-)
AMCG00015950 tll1,LOC107745060 other downstream 65579 31018611 ~ 31085062 (-)
G101853 NA other downstream 426212 30641194 ~ 30724429 (-)
AMCG00015942 NA other downstream 754334 30394051 ~ 30396307 (-)
AMCG00015936 med28,LOC107702388 other downstream 982291 30163273 ~ 30168350 (-)
G101540 NA other downstream 2044481 29104229 ~ 29106160 (-)
AMCG00015955 klhl2,LOC107745059,LOC107548347,LOC107655955 other upstream 17328 31171439 ~ 31193425 (-)
G101939 NA other upstream 113293 31267404 ~ 31287793 (-)
G101963 NA other upstream 475137 31629248 ~ 31629566 (-)
AMCG00015962 NA other upstream 519373 31673484 ~ 31699506 (-)
AMCG00015960 NA other upstream 553267 31707378 ~ 31717330 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G9538 cpe non-coding NC_053112.1 CM020909.1 33406650 ~ 33422237 (-)