AMCG00015955 (klhl2,LOC107745059,LOC107548347,LOC107655955)


Basic Information

Item Value
gene id AMCG00015955
gene name klhl2,LOC107745059,LOC107548347,LOC107655955
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 31171439 ~ 31193425 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015955
CGGCGGGCGGCCTGGTCTTCCACCGCAGGGGGCGCCACTGCTTCCACTGCCGCCCCGCCAGGCCGCCGTCTTGGCCCGGATCGCATCCTCGTCTCCGCGCTGCTCGCTGAAGGCAATAACAGatgcACTAAGCTGTGCCAACATAAACCCCATGATCTGAAAGACGATGTATCTGAGAAGCAGTGTCCAGTCACCGTGAACCCCCGTCATATGAAGAAAGCCTTCAAAGTCATGAATGAACTACGCAGcCAAAATCTTTTGTGCGACGTGACGATTGTCGCGGAGGATGTGGAGATCGCCGCACACAGAGTGGTCCTGGCAGCTTGCAGCCCCTACTTCCACGCCATGTTTACAGGGGAGATGAGTGAGAGTCGAGCCAAGCGCGTGCGCATCAAGGAGATGGACGGCTGGACGTTGGGCATGCTCATCGACTACGTGTACACCGCGGAGATCCAGGTCACCGAAGACAACGTGCAGGTCCTGCTCCCGGCCGCCGgcctgctgcagctgcaggaTGTGAAGAAGGCCTGCTGCGAGTTCCTGGGCTCCCAGCTGCACCCCACCAACTGCCTGGGCATCCGGGCCTTCGCCGATCACTTCTCCGAGGTGGTGCACAGCGAGGAGTTCCTGAACCTGGGCATCGAGCAGGTGTGCAGCCTGATCGCCAGCGACAAGCTGACCATCCCCTCCGAGGAGAAGGTGTTTGAAGCGGTGATCGCCTGGGTCAACCACGACAAGGATGTCCGACAGGAACACATGGCCCACCTGATGGAGCACCGCCTGCAAGGACTACCTCATCGAGGCCATGAAGTACCACCTGCTGCCGGCCGACCAGCGCTCCATGATGAAGACCATCCGGACGAGGATGAGGAGCCCCATCAGCCTGCCCAAGGAGTCGTGTACATGGGGGGGCTGGTGTACGCGGTGGGGGGGTTCAACGGCTCTCTGAGGGTCCGCACCGTGGACTCGTACGACCCGCTGAAGGACCAGTGGACGTGTGTGGCCAGCATGCAGGACCGGCGGAGCACGCTGGGAGCCGCGGTGCTGAACGGCCTGCTGTACGCCGCCTACAACACCAAGAGCAACGAGTGGTTTCACATCATCCCCATGAACACGCGGCGGAGCAGTGTGGGGGTGGGCGTGGTGGCAGGGCTGCTGTACGCGGTGGGGGGCTACGACGGGGCGTCCCGGCAGTGTCTGAGCACCGTGGAGGCCTACAACCCCAACACCAACGAGTGGAGCTACACGGCCGAGATGAGCACACGCAGGAGCGGGGCAGGTGTCGGGGTCCTCAAAGGCTTGCTGTACGCGGTTGGGGGTCACGACGGGCCCCTAGTGAGGAAGAGCTGCGAGGTGTACGACCCGGCCACCAACACCTGGAAGCAGGTCGCAGACATGAACATGTGCCGGAGAAACGCCGGTGTCTGTGCGGTGAGCAACGTGCTGTACGTGGTGGGGGGGGACGATGGCTCCTGTAACCTGGCCTCGGTGGAGTATTACAACCCCAGCACGGACAAGTGGACCCTGCTGCCCTCGTGTATGAGCACGGGCCGGAGCTACGCAGGGAGAGGGCGCTCAAAGTCCAGGTGCATTTTAAACGAGACTCACGTGAAGTCGGGACAGCGTCGAGGAGAAGACGGTTTGATACACAGACGGGACGACACGGCGTCTGACTCGGTCTGTGAAGCGAGGCCGTGGGACATTTTACAAACTCGGACGGCGCGGCGATTGCTGTTCCTTGCAACATCTCTGGACTCGATTACGAATCATTATAACGGCACGATCTTGCATTTCTTGGCCCTGCTGGCAGCTGTGTTTGTTAAAGCCAGTCAAGGACCTGCTTCTGCACCACAGATGCGAGGGAATGAAAACACGACTCTATCTGAGCTGGTCTCCTCAAAAGCATTCATCTCCGCTCTGCTAGTGTTAGTGCGGCCGGTTATTTTCACTGCAGTGGGTGTTTGCCTGCcgctcctccgcctcctccgtCTCGCCACCGCCGCCGGGGCCCCGTCCGCAGCGCGCCGCCGCTCCGCGCCTCTGATTGGCCAGACGCGCAGGGTCTCGCCGTCTCACTATCATCACTCCATCCAGCCAGCCAATGGCGGGCCGCGCCGGCCGCGC
>TU127284
CTCAGCTGCACTGGTACGCTGAACTCGGCTGTTTCGGAGCCCGTTCGCCGACAGCCCTGAGCTGATCTGGGTGCCTTTGTCGTGCAGGGCTGCTGTACGCGGTGGGGGGCTACGACGGGGCGTCCCGGCAGTGTCTGAGCACCGTGGAGGCCTACAACCCCAACACCAACGAGTGGAGCTACACGGCCGAGATGAGCACACGCAGGAGCGGGGCAGGTGTCGGGGTCCTCAAAGGCTTGCTGTACGCGGTTGGGGGTCACGACGGGCCCCTAGTGAGGAAGAGCTGCGAGGTGTACGACCCGGCCACCAACACCTGGAAGCAGGTCGCAGACATGAACATGTGCCGGAGAAACGCCGGTGTCTGTGCGGTGAGCAACGTGCTGTACGTGGTGGGGGGGGACGATGGCTCCTGTAACCTGGCCTCGGTGGAGTATTACAACCCCAGCACGGACAAGTGGACCCTGCTGCCCTCGTGTATGAGCACGGGCCGGAGCTACGCAGGCGTCACAGTGATTGACAAGCCCTTATGACTAGCTGTGAATCTACTGCTGTTCTGAACCTGAAGTCGGGCTTTGCTTAAACCAGTTTGGGGGCTGAAGCTTCTTGGAGGAGCTGCTTGGTCCTTTTGGCAGAAGACTGTCATTACTCTCTTACGGAGGAGCGGGGAAGACGAGGATTTTGCACTTAACGAGAGCACCACTGGGGGGTCAAACCTTTTTACGCACCTTCTTGCCGTCTGAAGGGAGAGGGCGCTCAAAGTCCAGGTGCATTTTAAACGAGACTCACGTGAAGTCGGGACAGCGTCGAGGAGAAGACGGTTTGATACACAGACGGGACGACACGGCGTCTGACTCGGTCTGTGAAGCGAGGCCGTGGGACATTTTACAAACTCGGACGGCGCGGCGAGTGTCGGGCAGAGTTCACGGTCTGGGGGCAGATGGCTGGAGGGCAGGGGCATTTCTGCGTACATGAGCATCACTTTGCCTTTTTCAGTTGCTGTTCCTTGCAACATCTCTGGACTCGATTACGAATCATTATAACGGCACGGTACAATATTGactgtaatgtatatatatttaaaaaaattgcatttgtagATATTTTAGTTTGCCTAACAGTATGCCACTTATGAAGGAGAATCAGGGGGGAAAtagcacattaaaaaatacttaaaaggcCAAAATTGGCAACAAAAGGAGAGGCAactaaatatttgcattttgtttacggtgtatttacttttctttcaaatcctGGCCCTGTTTTGATGCATTCCTTTGTTTTATCTAATGCGAATGTGATGGCATGCATTAAGATGCAGACATACATTAGATGCCtggatttgaaaaaacaaacaaacaaaaaatcaatcTGCATGATGTCATAAACTGGTCCTTTGGTTTTAACTGCTGGTTTTACTACTTTATGCTGTATGTGAGTGAATAATGGATGTGATGTGCTAATTCACTGATCTGGATCTCTTCTGGAAATGACcaaatttgttttctgttctcttcCTTTGTTTCTTTCCGGACTAATATTCTTATAAATGAACCTGGTCTTATTCTCTTCTTGTAAAAGTGTCAGGAATGTTGTGCAATGCTCTTATG

Function

symbol description
klhl2 Orthologous to human KLHL2 (kelch like family member 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015955 True 2124 mRNA 0.62 17 31171439 31193425
TU127284 False 1610 TUCP 0.50 4 31171907 31175745

Neighbor

gene id symbol gene type direction distance location
AMCG00015954 msmo1 coding downstream 122 31163968 ~ 31171317 (-)
AMCG00015952 NA coding downstream 17328 31150641 ~ 31154111 (-)
AMCG00015951 LOC106594914 coding downstream 40483 31122668 ~ 31130956 (-)
AMCG00015948 NA coding downstream 304653 30851821 ~ 30866786 (-)
AMCG00015947 ugt8,LOC107591551,LOC107745064,LOC107656191,LOC106595509 coding downstream 348388 30804089 ~ 30823051 (-)
AMCG00015956 NA coding upstream 45582 31239007 ~ 31240666 (-)
AMCG00015957 NA coding upstream 294732 31488157 ~ 31519717 (-)
AMCG00015958 fstl5 coding upstream 392511 31585936 ~ 31590808 (-)
AMCG00015961 NA coding upstream 553603 31747028 ~ 31766366 (-)
AMCG00015963 NA coding upstream 662197 31855622 ~ 31873893 (-)
G101911 NA non-coding downstream 200552 30892328 ~ 30970887 (-)
G101859 NA non-coding downstream 411015 30754887 ~ 30760424 (-)
G101855 NA non-coding downstream 424631 30746569 ~ 30746808 (-)
G101828 NA non-coding downstream 831711 30336087 ~ 30339728 (-)
G101728 NA non-coding downstream 1195715 29975393 ~ 29975724 (-)
G101996 NA non-coding upstream 631010 31824435 ~ 31824696 (-)
G102020 NA non-coding upstream 759483 31952908 ~ 31953648 (-)
G102092 NA non-coding upstream 1169038 32362463 ~ 32362863 (-)
G102149 NA non-coding upstream 1336846 32530271 ~ 32530594 (-)
G102234 NA non-coding upstream 1471347 32664772 ~ 32681331 (-)
AMCG00015950 tll1,LOC107745060 other downstream 86377 31018611 ~ 31085062 (-)
G101853 NA other downstream 447010 30641194 ~ 30724429 (-)
AMCG00015942 NA other downstream 775132 30394051 ~ 30396307 (-)
AMCG00015936 med28,LOC107702388 other downstream 1003089 30163273 ~ 30168350 (-)
G101540 NA other downstream 2065279 29104229 ~ 29106160 (-)
G101939 NA other upstream 73979 31267404 ~ 31287793 (-)
G101963 NA other upstream 435823 31629248 ~ 31629566 (-)
AMCG00015962 NA other upstream 480059 31673484 ~ 31699506 (-)
AMCG00015960 NA other upstream 513953 31707378 ~ 31717330 (-)
G102017 rapgef2,LOC102783712 other upstream 715064 31908489 ~ 31945175 (-)

Expression


Co-expression Network