Gene
RNA
| Item | Value |
|---|---|
| gene id | G98657 |
| gene name | pcnx3,LOC108279110 |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030132.1 |
| NCBI id | CM030132.1 |
| chromosome length | 32980562 |
| location | 12455930 ~ 12456206 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| pcnx3 | Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PCNX3 (pecanex 3). |
| description |
|---|
| pecanex-like protein 3 isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU123068 | True | 277 | lncRNA | 0.65 | 1 | 12455930 | 12456206 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00015541 | NA | coding | downstream | 1133430 | 11271539 ~ 11322500 (-) |
| AMCG00015536 | NA | coding | downstream | 1272040 | 11179092 ~ 11183890 (-) |
| AMCG00015533 | NA | coding | downstream | 1448555 | 10997549 ~ 11007375 (-) |
| AMCG00015534 | NA | coding | downstream | 1461045 | 10989882 ~ 10994885 (-) |
| AMCG00015530 | NA | coding | downstream | 1470720 | 10977415 ~ 10985210 (-) |
| AMCG00015556 | NA | coding | upstream | 6850 | 12463056 ~ 12469988 (-) |
| AMCG00015560 | NA | coding | upstream | 25516 | 12481722 ~ 12507107 (-) |
| AMCG00015562 | NA | coding | upstream | 117257 | 12573463 ~ 12574052 (-) |
| AMCG00015561 | NA | coding | upstream | 167052 | 12623258 ~ 12640668 (-) |
| AMCG00015568 | NA | coding | upstream | 307706 | 12763912 ~ 12779914 (-) |
| G98656 | pcnx3,LOC106602984,LOC107715400 | non-coding | downstream | 1075 | 12454625 ~ 12454855 (-) |
| G98654 | NA | non-coding | downstream | 1956 | 12453613 ~ 12453974 (-) |
| G98653 | NA | non-coding | downstream | 2381 | 12453240 ~ 12453549 (-) |
| G98652 | pcnx3,LOC107560657 | non-coding | downstream | 2777 | 12452866 ~ 12453153 (-) |
| G98651 | pcnx3,LOC107560657,LOC107715400 | non-coding | downstream | 3353 | 12452362 ~ 12452577 (-) |
| G98658 | NA | non-coding | upstream | 1420 | 12457626 ~ 12458073 (-) |
| G98662 | NA | non-coding | upstream | 13892 | 12470098 ~ 12470440 (-) |
| G98671 | NA | non-coding | upstream | 67587 | 12523793 ~ 12524075 (-) |
| G98836 | NA | non-coding | upstream | 792630 | 13248836 ~ 13249283 (-) |
| G98844 | NA | non-coding | upstream | 804805 | 13261011 ~ 13262227 (-) |
| AMCG00015557 | map3k11,LOC101463885,LOC102206973,LOC102778058,LOC100707946 | other | downstream | 25282 | 12399733 ~ 12430648 (-) |
| G98546 | NA | other | downstream | 1039268 | 11414367 ~ 11416662 (-) |
| G98543 | NA | other | downstream | 1069731 | 11353783 ~ 11386199 (-) |
| AMCG00015540 | NA | other | downstream | 1110440 | 11332663 ~ 11345490 (-) |
| AMCG00015535 | NA | other | downstream | 1194762 | 11185860 ~ 11261168 (-) |
| AMCG00015598 | timm10,LOC107746912,LOC107674252,LOC107556822 | other | upstream | 1001921 | 13458127 ~ 13468822 (-) |
| AMCG00015606 | NA | other | upstream | 1215109 | 13671315 ~ 13845677 (-) |
| AMCG00015612 | zdhhc5a,zdhhc5 | other | upstream | 1378311 | 13834517 ~ 13864738 (-) |
| AMCG00015628 | NA | other | upstream | 1838762 | 14294968 ~ 14336329 (-) |
| G99213 | NA | other | upstream | 1991505 | 14447711 ~ 14456695 (-) |
