G101571


Basic Information

Item Value
gene id G101571
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 29208297 ~ 29269160 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU126851
CAGTTTCACTTTGTTTCGCTTGTGTTTTCTCACACCGACAGTAAAGCAGGAATTACCTGTTGTGATGAACAACAACGACTGGCACCAAGGGAAGGCACAGCTTGTGAGGGCACCCAAAGGACAGTTTGTCTGTGTTCCTGAGCATCATGGCTCAAGTGCAACAAGATCAGATGAAGAAGCCACAATTGAAGACAGCCAATCCGACTGGCGAGACCAACATCGTCACTCGTCTCCATTTTCATGCTGAAGGAAGCATCAGAGAGTGCCTCAGCTTTGGTAGCTTTGGCAGCCATAGTGAAGAAGTGACCAAAGTGAAAGAAAGCCAGTCATATGGCTATGGAAGGCccaacctcagcctggctcagGTAAGATGGTACAGatataaaggaataaaaaacagacatgAAAGTCCC
>TU126852
NAACACactattagtatggtgttcctaataatcctttaggtgagtgtatGTCTCAGTAGAATAGAACATTAGAAGGATACCCTGTACATAGGGATTCCGGAATTcttgataaataaaacaccCATTACTTCcacaatatggaaacaaaaaggcATCACTCACTTATatcagattttttaaaatactcttcttacattaaaataattgatccAGAAGCACAGTGTCAGTAAAGAGcagtatttaacacatttacaaataagcattttgaaatcaaatattgatATTACTATTAACAACCAGTTGCCACCACCATTACTAGAAGAAATAAACCTAAAAAACTGCTTTCAAAACTATGTAGATTTTTCCAAGATACAGATTCCATGACTTTGCTCCCAATCATTCAATGGGAATGAGATCTAACACATTTGCTCCAAAACTTTTCTATGGCAACATCCACCAATATACCGCTAATTAAGTACAAGGTCAATCACACAGCACATATCACTCAGTACATAAGAGCATAtgaaagtgtccaattgagaggaggccattcaccccatcgtgctcgtttggtgtccattaataactaagtgatccaaggatcctatccagtctgtttttgaatgttcccaaattgtctcttcaaccacatcgctgggtagtttgttcagAATGTGATGCCTCTATGTCTGAAGAACAAGATGTTTAACATGGGCTTCTCTGATAAAATCACCTGTGCCCACCAGTACAACAATTCTGGAAATAAGTCACAAAGATTATGTCATCAATTCTAGACTGTAGCATCCCAATCTCTCCAACATTATGTTTACTAGGTGACCTCTCAGATACCAACATTCAATCACATAATACCGATCTCATTCTTGTTTGTCTATCTATTGCCAATAAATCCTCTTGAATTGGATACCTACAAAAAAACTCAACACCACACATTGGCTTGACAGAATACATCTCATTAGaaaaaatatctgtttaaaaaatgtcaaatttaaatgttCAGTAAGACACCTGCAATTGTATATCTGAATGTATTGCTTGATTAATGCCATATACCCAAACATAATCATATAGCATAACACattacaacaacacaaagcacactACACGACATAACGCACACAAAAGAACACAATgcacataaaataacaatgtacaTAAAAGTATACAAACACCGCCCCCCTGCCTCTTCAGGTTTTGAAATGTACTAcattgcccccccccacccatttcctgatatgttttgaaatgtatcataaagcatttttttttgtctgtcaaTGTTGCCATGTTTTATGAGTGAATGTTAcatgttgattgtttttatgtttgtatatgatacactaaaggaaattaatacaaataaatcagaaGGA

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
TU126851 False 413 lncRNA 0.47 3 29216161 29219485
TU126852 True 1391 lncRNA 0.35 2 29208297 29269160

Neighbor

gene id symbol gene type direction distance location
AMCG00015910 NA coding downstream 63386 29136419 ~ 29144911 (-)
AMCG00015909 NA coding downstream 80541 29119977 ~ 29127756 (-)
AMCG00015907 NA coding downstream 338053 28863860 ~ 28870244 (-)
AMCG00015906 si:ch211-15e22.3,galntl6,LOC107734540,LOC107598754,LOC106610159,LOC107676688 coding downstream 431236 28756095 ~ 28777061 (-)
AMCG00015905 galntl6,si:ch211-15e22.3,LOC107670789 coding downstream 553026 28646331 ~ 28655271 (-)
AMCG00015920 uso1 coding upstream 325004 29594164 ~ 29619723 (-)
AMCG00015925 NA coding upstream 406397 29675557 ~ 29680079 (-)
AMCG00015924 NA coding upstream 411523 29680683 ~ 29696689 (-)
AMCG00015923 ppm1k coding upstream 436815 29705975 ~ 29722947 (-)
AMCG00015926 NA coding upstream 496248 29765408 ~ 29769425 (-)
G101388 NA non-coding downstream 1538542 27669432 ~ 27669755 (-)
G101369 NA non-coding downstream 2438029 26768207 ~ 26770268 (-)
G101318 NA non-coding downstream 2633087 26574385 ~ 26575210 (-)
G101317 NA non-coding downstream 2634010 26574066 ~ 26574287 (-)
G101309 NA non-coding downstream 2682567 26523659 ~ 26525730 (-)
G101660 NA non-coding upstream 311689 29580849 ~ 29638632 (-)
G101728 NA non-coding upstream 706233 29975393 ~ 29975724 (-)
G101828 NA non-coding upstream 1066927 30336087 ~ 30339728 (-)
G101855 NA non-coding upstream 1477409 30746569 ~ 30746808 (-)
G101859 NA non-coding upstream 1485727 30754887 ~ 30760424 (-)
G101540 NA other downstream 102137 29104229 ~ 29106160 (-)
G101456 NA other downstream 950565 28161837 ~ 28257732 (-)
AMCG00015891 wdr17 other downstream 1138421 28041563 ~ 28069876 (-)
AMCG00015892 spcs3,LOC106602378 other downstream 1210620 27986755 ~ 27997677 (-)
G101067 NA other downstream 4207407 24992953 ~ 25000890 (-)
AMCG00015936 med28,LOC107702388 other upstream 894113 30163273 ~ 30168350 (-)
AMCG00015942 NA other upstream 1124891 30394051 ~ 30396307 (-)
G101853 NA other upstream 1372034 30641194 ~ 30724429 (-)
AMCG00015950 tll1,LOC107745060 other upstream 1749451 31018611 ~ 31085062 (-)
AMCG00015955 klhl2,LOC107745059,LOC107548347,LOC107655955 other upstream 1902279 31171439 ~ 31193425 (-)

Expression


Co-expression Network