G101939


Basic Information

Item Value
gene id G101939
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 31267404 ~ 31287793 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU127312
AAactgtgttgtttctctctgacaggtGGGAGACAGACTGCTTCCCCTGAGACACAACGTCTCTCAGAGCTGAGGATTGTGCTGCTGGGGAAGAGATGGGCTGAGAAGAGTTTATCAGGAAACACCATCCTGGGCAGAGAGGCGTttaacactgagagagagactgagcaGAGTGAGAAGAGCCAGGGTGAAGTGGCCGGGAGGCAGGTCACTGTGGTCCACACACCAGGCTGGGGGTGGAGTGATTCTGTACAGGAGACTCCAGAGTGTGTTAAACAGGAGATTGTGcgcagtgtgtctctgtgcccccCGGGACCCCACGCTCTCCTCCTCACCATTCCTGTGTTGGGCTCattcacagagacagagaggagagcagTGCAGGAACACCTGGAGCTCCTCAGTGAGACAGTCTGGAGACACACTATAGTGCTGTTCACTGGGGGGATGAACTGGGAGACACAACCATTGAGCAGCACattgagagaggaggggaggagcTCCAGCGGCTTGTGGAGAAATGTGGGAACAGGTATCATGTTCTCAACAACAGGGACAGGGGCGACGGCACTCAGGTCACAGAGCTGCTGGACAAGATAGAGGAGATGGTGGCAGGACACGGGGGCTGGCACATCACTACTGAGAGGAACTGGGAGATGGTAAAGAGGATCAGACAGAGGGTGAAAGAGAAGAAACAGAGGgatgaagagagaaagagagaggtagATCAAATCAGAAAGGAGTGCgaagagaaggaagaggagcTGAAACAGAAGATGGAGGAGGAGTGGAGCAGGAGAGAAgaggagctgaaggagaagtatagagagagggagagagagagggaagaggagcTGAAACAGAGGATGGAGGAGGAGTGCAgcaggagagaagaggagatgAAGGAGAAGAGAAAGACACTGAAGGAAGAGGAActggagaaagagacagaggaatCCACACTGCCTCTCAAGAAGAGGAACAGCAAGGAACACCCTCCAGGCAG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
TU127312 True 1006 TUCP 0.53 2 31267404 31287793

Neighbor

gene id symbol gene type direction distance location
AMCG00015956 NA coding downstream 26738 31239007 ~ 31240666 (-)
AMCG00015954 msmo1 coding downstream 96087 31163968 ~ 31171317 (-)
AMCG00015952 NA coding downstream 113293 31150641 ~ 31154111 (-)
AMCG00015951 LOC106594914 coding downstream 136448 31122668 ~ 31130956 (-)
AMCG00015948 NA coding downstream 400618 30851821 ~ 30866786 (-)
AMCG00015957 NA coding upstream 200364 31488157 ~ 31519717 (-)
AMCG00015958 fstl5 coding upstream 298143 31585936 ~ 31590808 (-)
AMCG00015961 NA coding upstream 459235 31747028 ~ 31766366 (-)
AMCG00015963 NA coding upstream 567829 31855622 ~ 31873893 (-)
AMCG00015971 etfdh,LOC102777291,LOC106604511,LOC107758565,LOC104941522,LOC102789087 coding upstream 700494 31988287 ~ 31993019 (-)
G101911 NA non-coding downstream 296517 30892328 ~ 30970887 (-)
G101859 NA non-coding downstream 506980 30754887 ~ 30760424 (-)
G101855 NA non-coding downstream 520596 30746569 ~ 30746808 (-)
G101828 NA non-coding downstream 927676 30336087 ~ 30339728 (-)
G101728 NA non-coding downstream 1291680 29975393 ~ 29975724 (-)
G101996 NA non-coding upstream 536642 31824435 ~ 31824696 (-)
G102020 NA non-coding upstream 665115 31952908 ~ 31953648 (-)
G102092 NA non-coding upstream 1074670 32362463 ~ 32362863 (-)
G102149 NA non-coding upstream 1242478 32530271 ~ 32530594 (-)
G102234 NA non-coding upstream 1376979 32664772 ~ 32681331 (-)
AMCG00015955 klhl2,LOC107745059,LOC107548347,LOC107655955 other downstream 73979 31171439 ~ 31193425 (-)
AMCG00015950 tll1,LOC107745060 other downstream 182342 31018611 ~ 31085062 (-)
G101853 NA other downstream 542975 30641194 ~ 30724429 (-)
AMCG00015942 NA other downstream 871097 30394051 ~ 30396307 (-)
AMCG00015936 med28,LOC107702388 other downstream 1099054 30163273 ~ 30168350 (-)
G101963 NA other upstream 341455 31629248 ~ 31629566 (-)
AMCG00015962 NA other upstream 385691 31673484 ~ 31699506 (-)
AMCG00015960 NA other upstream 419585 31707378 ~ 31717330 (-)
G102017 rapgef2,LOC102783712 other upstream 620696 31908489 ~ 31945175 (-)
AMCG00015965 NA other upstream 666853 31954646 ~ 31970287 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G313304 NA non-coding NW_019172866.1 APWO02000065.1 207085 ~ 207304 (-)