AMCG00016018


Basic Information

Item Value
gene id AMCG00016018
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 1263535 ~ 1312085 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016018
ATGCCCACTATCTTGTGGAGGAAAGACGGAGTCCTGGTCTCTACCCATGATTCCCGCATCAAGCAACAAGACACAGGAGCCCTTCAAATCCGTTACGCCAAGCTGGGTGACACTGGGATGTACACCTGCATAGCTTCCACTCCCAGTGGTGAAGCCACATGGAAAGCCTACCTCGAAGTTCAAGAATTTGGGGTTCCTGTACAGCCAGCCAGACCGACAGACCCCAATTTAATACCAAGCGCCCCTTCAAAACCAGAGGTCACAGATGTTACACGGAATTCTGTCACGTTGTCATGGAAGCCCAACCTGAATTCTGGAGCCACGCCTACCTCTTACATCATTGAGGCATTCAGCCATGCATCTGGGAGCAGTTGGCAGACTGTGGCAGAGCATGTGAAGACAGAAACCTATTCTTTGAAAGGCTTAAAGCCCAGCGCTGTCTACCTTTTCCTCGTGAGGGCTGCAAATGCATATGGACTGAGTGAGCCAAGCCCAATAGCGGATGCAGTGAAAACTCAAGACATTCCACCAACCAGTCAAGGTGTGGACCACAGACAGATCCAGAGGGAGCTGGGAGACGTAATCATCCATCTACACAACCCCACCATTCTGTCCTCCTCCTCAGTCAAGATCCAGTGGACGGTAGAGCAGCAGTCCCAGTACATCCAAGgctataaaataatgtacagagCATCAGTAGAAGGCCAGACAAAGTCAGAGTGGTCCATGTTTGAAGTGAGAACCCCTGGGGAAGAGAGTGCGATCATCCCTCAGCTCAAGAAAGGAGTCGTGTATGAGTTCAAAGTGCGTCCCTTCTTTAACGAGTTCCAGGGGGCGGACAGTGAGGTGAAGCTGGCTACAACCCTTGAGGAAGCTCCCAGCGCCCCTCCCCAAGGAGTCACCGTAACAAAGAACGATGACAATGGGACAGCTATCCTGGTATCCTGGCAACCACCCCCAGAGGAGTTCCAGAATGGAGTGGTAAAGGAGTACAAGATCTGGTGCCTTGGAAACGAGAGCAAGTACCACATCAACAGGACAGTGGACGGCACCACATTCTCGGTGGTCATTCCCAGCCTGTCCCCGGGAATCCGCTACAGCGTGGAGGTGGCAGCAAGCACCGGAGCAGGCCCGGGGGTGAAGAGTGAGCTGAGGTTCATCCAGCTTGACTCCTCAGGAAGGATCACAGAGAACGAGGAGACGGTGAGCACACTTTCCCAGCAGATTTCAGATGTAGTGAAGCAGCCTGCCTTTATCGCTGGAATTGGAGCTGCGTGCTGGATTATCTTGATGGTCTTCAGCATCTGGTTATACCGACACCGGAAGAAAAGAAGTGGACTGAGCAGCAGCTATGCTGGGATACGGAAAGTCCCATCATTTACCTTCACACCGACAGTGACCTATCAAAGAGGGGGAGAGGCTGTCAGCAGTGGTGGACGACCTGGGCTGCTGAATATCGGGGAGCCAGCCACTCAGCCGTGGTTAGCAGACACCTGGCCCAACACTTGCTCCAACCACAATGATTGTAGCATCAACTGCTGCACCGCAGGCAATGGGAACAGTGACAGCAACCTCACTACCTACAGCCGTCCAGCTGACTGCATCGCCAACTACAACAACCAGCTGGAAAACAAGCAGACCAACCTGATGGTTCCCGAGTCGGGTGTCTACGGCGACGTCGACCTCAGTAACAAGATCAACGAAATGAAGACGTTCAACAGCCCCAACCTGAAGGATGGCCGCTTCGTGAACCCAGCAGGGCAGCCCACTCCGTACGCCACCACCCAGCTCATCCAGTCCAACATCGGCAACAACATCAACAGTGGCACCGTGGAGATGAACGAGAAGCATTGGAAGCCATCTGGGCCACAGAAACAAGAGGCCTCTCAGCTACAATACAACATCATGGAGCAGAACAAACTGAACAAGGATTACCGAGTTGGTGACAGCACGATGCCAGCCACAATTCCATACAACCAGTCACATGATCAGAACACTGCAGGCTCCTATAACAGTTCAGACAGAGGCAGCAGCACATCTGGCAGTCAAGGTCACAAGAAAGGAACCCGCACGCCTAAACTGCCCAAACAGAGCACAATGAACTGGGCTGAtcttctccctcctccccctgcCAACCCTCCGCCATGCAGAAGCACTGAGGAGTATACCATCTCTATAGCGGAGAGCTATGACTCAGAGATGCAGTGCCCCATCCCGCCCACTAGGATGTACCTGCAGCAGGACGatctggaggaagaggaggaggaggaggaggaagaagatgaGATAGAGAGGGGTCCAACTCCTCCAGTGCGGGGGGCCGCTTCGTCCCCAGCCGCGGTGTCCTACAGCCACCAGTCCACTGCCACCCTGACCCCCTCCCCTCAGGAGGAGCTGCAGCCCATGCTCCAGGACTGCCCGGGTGACATGGTTCCCCAGCAGCACCAGCATGACCGCAGGCGTCACCCAGTTAGTCCCCCACCGCCCCCAAGACCTATTTCCCCCCCGCACACGTACGGGTACATCTCGGGACCGCTTGCCCTAGACACAGATGGCCCAGATGAGGAGGGGGATGAGACGGATGTGGAAGTGGCCAAGGTGCACACCAGGAGGCTGCTGCTGCGAGGCCTGGAGCAGACCCCAGCCTCCAGCGTGGGTGACCTGGAGAGCTCGGTCACCGGCTCCATGATCAACGGCTGGGGCTCCGCGTCTGAGGAGGACAATGCCTCGAGTGGCCGCTCCAGCGCCGTCAGCTCCTCTGACGGCTCCTTCTTCACCGATGCCGACTTCGCACAGGCCGTAGCTGCAGCGGCCGAATATGCCGGACTCAAGGTTGCCAAGTACTCCATGCCGGACGGAGCTGGCGgccGGAGACATTATATGAATCCTCACAGTCACAGACCTACCAGCCCCGTCTCTACAGACAGCAATATGAGCGCCGCTGTCATGCAGAAAACCCGACCaaccaaaaagcaaaaacacccCCAAGGACACCTACGTCGAGAAGCATACACAGAAGATCTGCCACCACCTCCGTTGCCTCCTCCCGCCATCAAGTCTCCTACTCACCAGTCCAAGTCTCTGCTCGACGGCCGACCCCTCATGACCACCAAACTGGCCTCTGTTGAGCAGCGTGCGGAGCGGCCCGGCGAGAGGAGGGGCACCAACTACAGATTGAGGGAAGGCACGGACCCACGCCAACACTCTGATGGGCGCACAAGCTCCTCAGAGCGCCGGGAGTGCCCAGAAAGGCATAAGACGCGTGGCAGCAAGGCAGCAAAGCATGAAAGCACACCGGCCAAGTCTCGCCAACACCCAGGTGGGGAGGACATTCTGCCGTACAGCCGGCCTATGTTCCCCGTGGTACACAGCCCCCGAGAccccagctcctccagctccatGTCCTCCCGTGGCTCGGGGGGGCGGCGGAGAGGGGAGCAGGCAGGCGGGGGGCGCAGGAACCCCTCTGATGTCGGATTGCCTGGAATGGGGGCCTTTGAGCAAGAAGAGGAGGAGTTAGAGGTCAGGCagatttttatgtattttttcctcatCAAGTTTAGTCTTCCATTCTCGATTATTAAGAGCCATTCGTTACCAGCCCTGTAA

Function

GO: NA

KEGG:

id description
K06753 ROBO1; roundabout, axon guidance receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016018 True 3609 mRNA 0.56 20 1263535 1312085

Neighbor

gene id symbol gene type direction distance location
AMCG00016010 NA coding downstream 1066637 187079 ~ 196898 (-)
AMCG00016012 NA coding downstream 1081998 159706 ~ 181537 (-)
AMCG00016013 NA coding downstream 1109562 149601 ~ 153973 (-)
AMCG00016011 NA coding downstream 1149970 90982 ~ 113565 (-)
AMCG00016020 robo1 coding upstream 1694 1313779 ~ 1341211 (-)
AMCG00016019 robo1,LOC106613191 coding upstream 146987 1459072 ~ 1459832 (-)
AMCG00016023 NA coding upstream 1150986 2463071 ~ 2515080 (-)
AMCG00016022 NA coding upstream 1207458 2519543 ~ 2527277 (-)
AMCG00016026 NA coding upstream 1283929 2596014 ~ 2600477 (-)
G10233 NA non-coding downstream 940535 322629 ~ 323000 (-)
G10229 NA non-coding downstream 992012 270921 ~ 271523 (-)
G10214 NA non-coding downstream 1062419 200279 ~ 201116 (-)
G10298 NA non-coding upstream 221316 1533401 ~ 1533655 (-)
G10307 NA non-coding upstream 384720 1696805 ~ 1705596 (-)
G10314 NA non-coding upstream 531843 1843928 ~ 1844160 (-)
G10319 NA non-coding upstream 595840 1907925 ~ 1908294 (-)
G10321 NA non-coding upstream 606344 1918429 ~ 1919336 (-)
AMCG00016024 ilk,LOC106581335 other upstream 1220532 2532617 ~ 2554946 (-)
G10420 LOC101154678 other upstream 1398314 2710399 ~ 2710685 (-)
AMCG00016029 NA other upstream 1472040 2784125 ~ 2846357 (-)
G10478 NA other upstream 1722337 3034422 ~ 3035183 (-)
AMCG00016046 NA other upstream 2216757 3528842 ~ 3542536 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location