AMCG00016022


Basic Information

Item Value
gene id AMCG00016022
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 2519543 ~ 2527277 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016022
CATGACTAGCTCTGTTGAAACATTTGCAAGTTATAACTTTCGTTCTGTTTCGCAATTAATTGTGTATAATTGATCAACATTTGTAAAAGACTACAGATTTTTGCCTTTTGCTGCATGTTTTGGCGAGCGTAGCCTTCTCTGTCtgtacttcctgtttatttgagACATTCAGTCTGTGACAAAGACAGCTGAGTGtgaaattaaagacaaatataCCACAATTAAGGGGGTTTCGCTGCGGTATTGCTGAAAAGGAACATATGAATCGATTATGGTAGGGCTATGAGCGATAAGAAAACTAATGCAGGGGGTGCATTACAGGAATTTTGACCATAAGGTTTGTTACAGTCATCGCTTTTGGAGGGTGAAAgagttgttttaaaaacacccagcgtaatacatgtttttcttaatgCTAAGGCTAACTGTCTGAAGTCAAGATTGGTTTCTGACCTGACGACAAAAACGAAACTGCAGGACGTGTCGTAACCCCACTGTTGGCGAGTTCGGCTCTCTGAGACCAAGATGCTGGCGCTGAAGgtgctgtgtgtgctgtatcTGGCCACTGTGTTTAACCATGCTCCGTTTGGGACAACATACCCTGTCCCAGAAGaacattacttaattgaatccgAAGGGATACTGAACAATTTAAGGGCTCACATAGGATGGCGAAATCTAACCTGTCCGCTTTGCAAAGCCCTATTTGCTGCGGTCGACGTCGCACTTTGGAGTGAGAAGAACGAGGAGCGGGTGGCGGCCTTAGCTGCCAAGGTGTGCATCCAGTTACACCTGGCTGACCATAAGGTGTGCACTGATATCACGGAGCTCTTCAAGAGCGATCTCCTCTCTGTGTTACTAAGGTCTTTCCTGCGGCCTGACGAGGTGTGCGCTTTGCTGGTGGGCCCTGACTGTGGCCACTTTGACATCTATTCCTCCTGGAATGTTAGCTTGCCACAAGTACCTAAGCCTCCGGTGGTGCCTCTTTCTCCACCTAAACCAGGGGCCCCCACAAGCAGGGTGCTCTTCCTCACCGACGTGCACTGGGACCATGACTATGCTGAGGGAAGCAATGCTGAATGTAAGGAGCCTCTGTGCTGCCGTAATGAGTCGGGCTCCCCACATTGGCACCAAAGGGGTGCTGGTTACTGGGGCTCCTACAGTAAGTGTGACCTTCCCCTGCACACTGTGGAGAATCTCCTTCAGCATGTTGCAAGCACTGGCCCCTGGGACTGGGTCTACTGGACAGGAGATATCCCTGCTCACAACATCTGGGCCCAGACTCGCAGCCAGCAACTGTTGGAACTCAGTGGTATCACCCAGCTGATTCGCAAGTACCTGGGTAACATACCGGTATACCCTGCGGTGGGCAACCACGAGAGCACTCCCGTCAACAGCTTCCCACCACCTTTCATCCATGGCAACCGCTCCTCGACCTGGCTGTATGACAGGATGGCAGAGGAGTGGAGTGCCTGGCTGCCCCCACAGGCGCTGCAGACTCTCAGGTGGGGTGGATTCTACAGTGTGGAGGTCCAGCCTGGGCTACGCATGGTCTCCCTCAACATGAACTTCTGCGCCCATGAGAACTTCTGGCTTCTCATCAATTCCACTGACCCAGCAGACCAGCTGCAGTGGCTCATCGGCATCCTGCAAGAATCTGAGAACAATGGGGAAAAGGTGCACATCATTGGTCATATTCCACCCGGCTTGTATGAAAGCACCATCACAGGACAGTTTTTTGGACACACGCACTTGGATGAGTTCCAGATGTTTTATGATGAAGAGACCCTGAGCCGCCCATTGGGAGTGGCCTTTATTGCTCCTAGTGTAACCACCTATGTCAACCTCAATCCAGGTTATCGCATGTACTATGTGGATGGCAATTACTCTGGCAGCTCCCGCCTGGTTCTGGACCATGAGACACACATTCTGAACCTGACGGAAGCCAATAACCGCACTGCTTCTCCCAGGTGGAGATTGTTGTACCGGGCGCGGGAGGCCTATGGACTGGAGACTTTGTTCCCTGCCGACTGGGATGGGCTCATTAAAACATTCCTCCAGGATGACCGTGCTTTCAAGAACTTCTGGTACCTGAACCACAAGGGCCATGTGTCTGAGCCCTGCAAGGACACTTGCAAGACTACTGTCCTCTGCTTCCTGCGTAGTGGCCGCAGTGGAGACCCACAGCTCTGCGACAGCCTTGGCTCAGCTGTGCCCTATGGGGACATTGTAAAGAGCGTGAAACTAAGGGCTATGTGTTGATGACCTGTGATTGATTGTGATCGTATGACCACAAGATCAATTatgatcaatttaaatttagaaGTGACAGATTCTGATATTCTAATAATTGTCTAACTGCACTTGGTAGATAATGCTGTATGAATACGTAATTGATTCATGGGTGGCTTCTGGTAAACCTGAAAAAATCCACTGATttatgatttactttttttttttttttctgctcacCCTGTTCCAGTTTCAGGCTGATATCACTGTCTGACTGATTAGAGATTTGCATTGGGGTTGAAAGACCGCCTTCCCAATCCACCCAACATGTGCCTGCCTTTCAATAGGTTTTTACTTACGTTTTTAGGATTTGAACAAGCTATAACAAGTGTAAAACAGGAAAACGTGTACATGTACACCAGATGAATCCTTACTTGATgcattgcactttttattttattttgtcttgtgggagtacatatttttaaaattttggaTGCAGAATGTGTAGTTTATTATTGCAAATTAAACTATGAAACACTTTATAATTTGTATCTAGTTTGATAGAAAACGTTTTTATAAAAATAGTAGCAGTACTCGTAGTACCACAGATGCCTAAACCTGCTGTACAATTATTTAGCCAaatcaatttccattttaattgctgtttttgcagAACATGACTTATGTTACCCTACATGATAAACTCGGGGTATGTTAAACCATCCTCAAATTAAACTAGTTATCTTCATTAAAACAGAATcacttcatgtttaaaaaaacaaacaaacaaacaaacaaacaaaaacggtTTGTGAAAACGGTTTAGAAACTTTAGTGGTATCCagatttattgtttaattgtattatgagCTTTAATGTccgaaaacaaattaaagtaacattattttaatttagtagtgtgtgtttgaatcctataaacaattaatgtaatagttttttttttttttttttttcctgcttctacAAATGCAGTTTGATATGTAGCTTGATATTTAGCTGGCAATGCACACAAAATATGGAAAACATCTTGTACACATCAacaataattgcttttaaatgtgttgggTACCTGAATTTCACTCacattatatttcactttgcatagttttatttgtaaacatgtaGGATAACTGATTACATGTATTTGGAAGTGCAACCTGAtttttgttcttcctttttTAACCACAACaacgttttatttaatttctgtatatggtaatttattgtgtgtgtgtgt

Function

GO: NA

KEGG:

id description
K12350 SMPD1, ASM; sphingomyelin phosphodiesterase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016022 True 3493 mRNA 0.44 6 2519543 2527277

Neighbor

gene id symbol gene type direction distance location
AMCG00016023 NA coding downstream 4463 2463071 ~ 2515080 (-)
AMCG00016019 robo1,LOC106613191 coding downstream 1059711 1459072 ~ 1459832 (-)
AMCG00016020 robo1 coding downstream 1178332 1313779 ~ 1341211 (-)
AMCG00016018 NA coding downstream 1207458 1263535 ~ 1312085 (-)
AMCG00016010 NA coding downstream 2322645 187079 ~ 196898 (-)
AMCG00016026 NA coding upstream 68737 2596014 ~ 2600477 (-)
AMCG00016027 NA coding upstream 79431 2606708 ~ 2671709 (-)
AMCG00016028 timm10b coding upstream 187692 2714969 ~ 2715852 (-)
AMCG00016041 NA coding upstream 936389 3463666 ~ 3475993 (-)
AMCG00016042 NA coding upstream 970425 3497702 ~ 3502851 (-)
G10357 NA non-coding downstream 94063 2425021 ~ 2425480 (-)
G10346 NA non-coding downstream 261828 2257416 ~ 2257715 (-)
G10343 NA non-coding downstream 268902 2250401 ~ 2250641 (-)
G10324 NA non-coding downstream 431993 2087271 ~ 2087550 (-)
G10321 NA non-coding downstream 600207 1918429 ~ 1919336 (-)
G10415 NA non-coding upstream 169392 2696669 ~ 2702512 (-)
G10432 NA non-coding upstream 208904 2736181 ~ 2736474 (-)
G10435 NA non-coding upstream 222381 2749658 ~ 2749864 (-)
G10440 NA non-coding upstream 238217 2765494 ~ 2767457 (-)
G10464 NA non-coding upstream 345947 2873224 ~ 2963628 (-)
AMCG00016024 ilk,LOC106581335 other upstream 5340 2532617 ~ 2554946 (-)
G10420 LOC101154678 other upstream 183122 2710399 ~ 2710685 (-)
AMCG00016029 NA other upstream 256848 2784125 ~ 2846357 (-)
G10478 NA other upstream 507145 3034422 ~ 3035183 (-)
AMCG00016046 NA other upstream 1001565 3528842 ~ 3542536 (-)

Expression


Co-expression Network