AMCG00016049


Basic Information

Item Value
gene id AMCG00016049
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 3886298 ~ 3920503 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016049
CAAGTTCCTCCTTTGATTGACAAGAGTAACCGGAAATGACGCAGGGGGAGAGGGCGGAGGCTTCACTGTTTTCCCGCGGTTTGAGAGGACTCTGAACCAGGCTCCGGGCGATTCACAGTTTTGTCGCAGCTGGGGGGgtttaacatttacaaacaaacaaacacaaaatacagcgCCATCAACGACAGGATACTCGGTCGACATTTCTCATTGTCCTCCCCTCACCAGGACCTGCGCTGCGAGCTTAAACATGCCCCCGAAGAGACGCAGCGCTGCCCAGACTGCACCGCTTCACAAAGTGGCGGAAGATAAACAGACACACGGTAGCAGCCCCGGGAGTCCGGAGAAGATGGGCAAACTGACCCcgaaaagCCATGAAACAAAGAAGCCGGAATTCGTCTTGCTGTGTCAGCAATTGGACGTATTGGACGAAGTGTGCAACCGAGCCTGGGATGTATGGGATGAGTTACAAGCCTCTCTGGACATCATGCTCGACACCAACAAGAAATACTGGGCGGCCTGTTTGTTTATAGCTGTGACTGACTTGGATGCCATGACTTTTACAATCACAGACCTCCAGAAGGCAGTTCATGTCAACATGAAGCAGTTCTTTGACCTTTTGAAGGAAATGGATGTCAACTTGGTCACCATCAGCACTAAAGTAAATGCTGCCGTGTCCAGGCTGGAGAAGAAGTACGAGGTGCAGCTGGCTCTATTTCAGAGGTTTGAAAGttgtgttttttctatttttgtgcaGCTGggtcaccccccccaccctcccacccccacTGCCTTTGACACTTTGACACCTTTTTTTGGAAAAGTGCTGCAGATGGAGGATGACCTGGTGATCTCATTTCAGCTGCTGCTCTGTGTGCTGGAGTACTTTATACAGCGCTCTCCCCCGTCTGTGCTGCAGGAGCCTTTCAAGACTGCTGCTGATGGGCCCCTCCATGCCCCCCCCACCAGGGCATCACGCCGAAGTCACGGCAGGGGTGCCCGCTCCAGCCCCAAACCTGCCCCTCCTGACCAACGGGTTTTGGAGGCCCTTTGCAAGGAGAACGACTGCGAAGTGGAGGAGGTGAAGAATGTATATATAAGCAGCTTCACTGACTTTCTGGAGTCAGTGGGACTATCAGGATCACAGGGGATCCCCAAGacTGACAACCTCTCCAGTCAATATGAAGAAATTTACCTGAAAAGCAAAGATTTCGATGCCAGGTTATTCTTGGATCACGATGAAACACTACAGCCAGTGAAATTAGACCCGTCAGAGTTTGAGAGAACACCCAAAAAGCATCACCTGGAAGAAGAGGTCATCTCAGTCCCCCCTCAGACACCAGTCCGAGCTGCCATGAACTCCATCCAACAACTAATGGTCTTCCTGAACTCGGCCAGTGACCAGCCTGCTGGAAAGCTTGTACACTACTTCAGTAACTGCACTGTGGACCCTTCCGATGACATCACCAGGAGGGTGGAGAGCCTGGGCCGTCTGTTCAGTGAAAGGTTTGCTCAATCAGTGGGCCACCGCTGCATGGAAATTGGATCGCAGAGGTTTGTACTTGGTGTTCGGTTATACTACAGAGTCATGGAGTCCATGCTGAAATCGGAGGAAGAACGGCTCTCTGTGCAAAACTTCAGCATGCTGCTCAACAATGCTGCCTTCCACACCTCACTCCTAGCCTGCGCTCTGGAGGTTGTCATGGCCACCTATGgctGGAGTACCTTTAAAAGTGGCGGCTCCTCAGAGACCGACCTCTCATTCCCATGGATCCTGGACGTCTTTCAGCTGAAGGCCTTTGACTTCTACAAGGTCATTGAAAGCTTCATCAAGGCGGAGCCCAGCCTGACCCGAGAGATGATCAAACACCTGGAGCGCTGTGAACACCTGATCATGGAGAACATTGCGTGGAGAGCGGATGGCTCCAGGGCGCCACAGGAGCTGGCCATATTCAGAATGGCTCAGTCAGTCTAA
>TU13237
TTTGAGAGGACTCTGAACCAGGCTCCGGGCGATTCACAGTTTTGTCGCAGCTGGGGGGgtttaacatttacaaacaaacaaacacaaaatacagcgCCATCAACGACAGGATACTCGGTCGACATTTCTCATTGTCCTCCCCTCACCAGGACCTGCGCTGCGAGCTTAAACATGCCCCCGAAGAGACGCAGCGCTGCCCAGACTGCACCGCTTCACAAAGTGGCGGAAGATAAACAGACACACGGTAGCAGCCCCGGGAGTCCGGAGAAGATGGGCAAACTGACCCcgaaaagCCATGAAACAAAGAAGCCGGAATTCGTCTTGCTGTGTCAGCAATTGGACGTATTGGACGAAGTGTGCAACCGAGCCTGGGATGTATGGGATGAGTTACAAGCCTCTCTGGACATCATGCTCGACACCAACAAGAAATACTGGGCGGCCTGTTTGTTTATAGCTGTGACTGACTTGGATGCCATGACTTTTACAATCACAGACCTCCAGAAGGCAGTTCATGTCAACATGAAGCAGTTCTTTGACCTTTTGAAGGAAATGGATGTCAACTTGGTCACCATCAGCACTAAAGTAAATGCTGCCGTGTCCAGGCTGGAGAAGAAGTACGAGGTGCAGCTGGCTCTATTTCAGAGGTTTGAAAGG

Function

GO:

id name namespace
GO:0050794 regulation of cellular process biological_process

KEGG:

id description
K06618 RB1; retinoblastoma-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016049 True 1975 mRNA 0.52 17 3886298 3920503
TU13237 False 654 TUCP 0.50 4 3907759 3920424

Neighbor

gene id symbol gene type direction distance location
AMCG00016050 NA coding downstream 50943 3823251 ~ 3835355 (-)
AMCG00016045 NA coding downstream 101802 3783534 ~ 3784496 (-)
AMCG00016047 NA coding downstream 217740 3622918 ~ 3668558 (-)
AMCG00016042 NA coding downstream 383447 3497702 ~ 3502851 (-)
AMCG00016041 NA coding downstream 410305 3463666 ~ 3475993 (-)
AMCG00016048 NA coding upstream 8231 3928734 ~ 3947435 (-)
AMCG00016053 lhfp,LOC105029023,LOC107670626,LOC107740377,LOC107593461 coding upstream 184228 4104731 ~ 4105731 (-)
AMCG00016058 NA coding upstream 455942 4376445 ~ 4378160 (-)
AMCG00016059 foxo1 coding upstream 504485 4424988 ~ 4427749 (-)
AMCG00016063 NA coding upstream 522913 4443416 ~ 4451855 (-)
G10624 NA non-coding downstream 144036 3741593 ~ 3742262 (-)
G10592 NA non-coding downstream 339207 3490758 ~ 3547091 (-)
G10596 NA non-coding downstream 364263 3514439 ~ 3522035 (-)
G10556 NA non-coding downstream 507713 3378378 ~ 3378585 (-)
G10548 NA non-coding downstream 514400 3371541 ~ 3371898 (-)
G10692 NA non-coding upstream 51383 3971886 ~ 3973511 (-)
G10696 NA non-coding upstream 57056 3977559 ~ 3979117 (-)
G10698 NA non-coding upstream 67150 3987653 ~ 3987955 (-)
G10715 NA non-coding upstream 246275 4166778 ~ 4170338 (-)
G10735 NA non-coding upstream 434350 4354853 ~ 4355296 (-)
AMCG00016046 NA other downstream 343762 3528842 ~ 3542536 (-)
G10478 NA other downstream 851115 3034422 ~ 3035183 (-)
AMCG00016029 NA other downstream 1039941 2784125 ~ 2846357 (-)
G10420 LOC101154678 other downstream 1175613 2710399 ~ 2710685 (-)
AMCG00016024 ilk,LOC106581335 other downstream 1331352 2532617 ~ 2554946 (-)
AMCG00016074 NA other upstream 983353 4903856 ~ 4929900 (-)
AMCG00016110 ufm1,LOC107701138 other upstream 3760408 7680911 ~ 7753437 (-)
AMCG00016119 NA other upstream 4198718 8119221 ~ 8124033 (-)
G11326 NA other upstream 4271043 8191546 ~ 8194432 (-)
AMCG00016134 NA other upstream 4903042 8823545 ~ 8827760 (-)

Expression


Co-expression Network