AMCG00016050


Basic Information

Item Value
gene id AMCG00016050
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 3823251 ~ 3835355 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016050
GACTCGCCGCTGTTTGAGCTGCTGCATCAGTCCCGGGAGCAGGAGGGGGTGGTGGAGCAGGCCGAGCCCCCCAGCACGCTGAACCAGCCCCTGCAGCACAACCACACTGCCGCTGACCTCCAGCCTCAGGTCCCCTCCCTCAAGCACCTCAAATCCACTTCACTCTCCCTCTTCTACAAGAAAGTGTACCGCCTGGCTTACCTGCGTCTAAACCTGCTGTGCTCCCACCTGCTGAGCGACCACCCTGAGCTGGAGCCCATCATCTGGACGCTGTTCCAGCACACGCTGCAGCACGAACCATTGTCACGGCTTACAAGGACCTTCAAGCGCGTGCTGATCCGGGAAAGCCAGTACGACTCCATCATCGTGTTCTACAACAACGTCTTCATGCAGAAGCTGAAGACCAACATCCTGCAGTATGCCTCGCCCAGGccGCCCACTCTTTCCCCCATCCCACACATCCCCTGTAGCCCCTACAAATTCCCCAACTCCCCTCTGCGTGTGCCAGGAAGCAACAATGTGTACATCTCCCCTCTGAAGAGCGCCCGCATGTCGCCCAGTGTGATGACGCCCCGCACCAGAATCCTAGTGTCCATCGGCGAGTCTTTCGGGACCTCTGAGAAATTCCAGAAGATTAACCAGATGGTGAGCAACAGCGAATGGTCTCTGAAGAGGAGCCTGGACAACGACCGCACCCCCAAGCCGCTCAAGAGGCTGCGCTTCGACATGGACGGCCAGGATGAGGCAGACGGAAGCAAGTCCACGGGGGAGTCCAAATTCCAACAGAAGCTGGCTGAGATGACCTCCACCCGGACCCGCATGCAGGAGCAGAAGCTGAAGGACGCAGCCGACTCCCTGAAGAAGGAGCTTTCCTGA

Function

GO:

id name namespace
GO:0021554 optic nerve development biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0007601 visual perception biological_process
GO:0050794 regulation of cellular process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016050 True 876 mRNA 0.59 10 3823251 3835355

Neighbor

gene id symbol gene type direction distance location
AMCG00016045 NA coding downstream 38755 3783534 ~ 3784496 (-)
AMCG00016047 NA coding downstream 154693 3622918 ~ 3668558 (-)
AMCG00016042 NA coding downstream 320400 3497702 ~ 3502851 (-)
AMCG00016041 NA coding downstream 347258 3463666 ~ 3475993 (-)
AMCG00016028 timm10b coding downstream 1107399 2714969 ~ 2715852 (-)
AMCG00016048 NA coding upstream 93379 3928734 ~ 3947435 (-)
AMCG00016053 lhfp,LOC105029023,LOC107670626,LOC107740377,LOC107593461 coding upstream 269376 4104731 ~ 4105731 (-)
AMCG00016058 NA coding upstream 541090 4376445 ~ 4378160 (-)
AMCG00016059 foxo1 coding upstream 589633 4424988 ~ 4427749 (-)
AMCG00016063 NA coding upstream 608061 4443416 ~ 4451855 (-)
G10624 NA non-coding downstream 80989 3741593 ~ 3742262 (-)
G10592 NA non-coding downstream 276160 3490758 ~ 3547091 (-)
G10596 NA non-coding downstream 301216 3514439 ~ 3522035 (-)
G10556 NA non-coding downstream 444666 3378378 ~ 3378585 (-)
G10548 NA non-coding downstream 451353 3371541 ~ 3371898 (-)
G10673 NA non-coding upstream 34369 3869724 ~ 3912272 (-)
G10692 NA non-coding upstream 136531 3971886 ~ 3973511 (-)
G10696 NA non-coding upstream 142204 3977559 ~ 3979117 (-)
G10698 NA non-coding upstream 152298 3987653 ~ 3987955 (-)
G10715 NA non-coding upstream 331423 4166778 ~ 4170338 (-)
AMCG00016046 NA other downstream 280715 3528842 ~ 3542536 (-)
G10478 NA other downstream 788068 3034422 ~ 3035183 (-)
AMCG00016029 NA other downstream 976894 2784125 ~ 2846357 (-)
G10420 LOC101154678 other downstream 1112566 2710399 ~ 2710685 (-)
AMCG00016024 ilk,LOC106581335 other downstream 1268305 2532617 ~ 2554946 (-)
AMCG00016049 NA other upstream 50943 3886298 ~ 3920503 (-)
AMCG00016074 NA other upstream 1068501 4903856 ~ 4929900 (-)
AMCG00016110 ufm1,LOC107701138 other upstream 3845556 7680911 ~ 7753437 (-)
AMCG00016119 NA other upstream 4283866 8119221 ~ 8124033 (-)
G11326 NA other upstream 4356191 8191546 ~ 8194432 (-)

Expression


Co-expression Network