AMCG00016063


Basic Information

Item Value
gene id AMCG00016063
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4443416 ~ 4451855 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016063
ATGGCATCCCGGGACGAAGCGGCCGAGGAGAAGCGCCCCAGGATCGCATCGCGAAAACAGAGCCGAGCGCCTGTCAGAACACCGGCCCAGGGCCTGCAGCCCAGTCCGCTTTCCAACCCGAAAGTCGCTGCTTCCCCTCACAAGTTCTTCAGCACTAGTAGGGATGAGTCTTCTATTCCTGAGGAGGGAGACAAGAAGTCCAAGGAAAAGGAGAAGGGACCAGCAAAATCAGGGAAAGAAAACCTGCTAGATCTCCTTGGAGCCATGAAAGTGGAGGTGACCACGAAGAAGAAGTTTCAGGCTGTGAATGTTCAGAAAAGACAAGAGTTGCCCAGAGTTGCGCCTCGGTCCATGGAGAGTGCTAGCAGTATGTTCCAGAAAGCCAGCCCAGAGCGACAGTCCCAGAGtgtccctctgagtCCAGAGTTGGTGGCTGCTGCCTCAGCCGTGGCCTCCTCCATGCTCAATAAGAGCCAGACGGAATCGGAGCTCCTTCAGCAGCTGAGGAAACACGAGACCATTGTGGAGGACCAGAAGAAAAcggacaacaacaacattggAAACATCATTGCTGACATGAAGGTTGGGAAACGCCCCAATGCACGCTCCAGCAGCAGACCAGCGAATCAGATCCGCTTTGACGATGATGGGCGGGGCTTCATTCCTGACAGGGGGTTGGCCAGCGAACTAGAGGGAGTGCGACGCAGGAGGGGCTTGTTTGTTGGTAAGAGACTGAACATCTTTCCTGCTGTCTCCGAGACAACCGAAACAGAAACCAAAGCAGTCTCCTCTCCCACACTCTGGGACATGGAGATGGCCAATCAGATTGCAACAGTGACCAGACACCTGCCCCGTAATGGCTTTGAGGAGATGATCCAGTGGACTCGCGAAGGCAAACTCTGGCTTTATCCCATCAACAATGAGCAGGGGCTGGAGGAGGAAGCGGAAGTCCCATTCCATGAACATGTGTTTCTTGACAAGCACCTGGAGGATTTTCCCAAGCAAGGCCCCATCCGCCACTTCATGGAGCTGGTGATCACCGGATTGTCCAAGAACCCGCACCTTACTGTGCATCAGAAGAAGGAGCACATTGCTTGGTTTCGGGACTATTTCCAGCAGAAGGAAGAGCTGCTAACTGAGGCAGAGGCTGGCCTGCATTGA

Function

GO: NA

KEGG:

id description
K17410 MRPS31; small subunit ribosomal protein S31

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016063 True 1161 mRNA 0.54 7 4443416 4451855

Neighbor

gene id symbol gene type direction distance location
AMCG00016059 foxo1 coding downstream 15667 4424988 ~ 4427749 (-)
AMCG00016058 NA coding downstream 65256 4376445 ~ 4378160 (-)
AMCG00016053 lhfp,LOC105029023,LOC107670626,LOC107740377,LOC107593461 coding downstream 337685 4104731 ~ 4105731 (-)
AMCG00016048 NA coding downstream 495981 3928734 ~ 3947435 (-)
AMCG00016050 NA coding downstream 608061 3823251 ~ 3835355 (-)
AMCG00016064 LOC105011210,LOC107718790 coding upstream 24484 4476339 ~ 4490665 (-)
AMCG00016062 NA coding upstream 55608 4507463 ~ 4517486 (-)
AMCG00016065 vps36,LOC107701118 coding upstream 66715 4518570 ~ 4532263 (-)
AMCG00016073 LOC105011208,LOC102232466,LOC101073007,LOC103140675 coding upstream 124689 4576544 ~ 4582296 (-)
AMCG00016072 LOC102232466,LOC105915781,LOC105011208,LOC106514111,LOC104923823 coding upstream 149086 4600941 ~ 4603273 (-)
G10740 NA non-coding downstream 69695 4371465 ~ 4373721 (-)
G10735 NA non-coding downstream 88120 4354853 ~ 4355296 (-)
G10715 NA non-coding downstream 273078 4166778 ~ 4170338 (-)
G10698 NA non-coding downstream 455461 3987653 ~ 3987955 (-)
G10696 NA non-coding downstream 464299 3977559 ~ 3979117 (-)
G10805 NA non-coding upstream 134868 4586723 ~ 4587875 (-)
G10806 NA non-coding upstream 139965 4591820 ~ 4592077 (-)
G10812 NA non-coding upstream 170876 4622731 ~ 4623216 (-)
G10821 NA non-coding upstream 186595 4638450 ~ 4638659 (-)
G10823 NA non-coding upstream 187934 4639789 ~ 4641030 (-)
AMCG00016049 NA other downstream 522913 3886298 ~ 3920503 (-)
AMCG00016046 NA other downstream 900880 3528842 ~ 3542536 (-)
G10478 NA other downstream 1408233 3034422 ~ 3035183 (-)
AMCG00016029 NA other downstream 1597059 2784125 ~ 2846357 (-)
G10420 LOC101154678 other downstream 1732731 2710399 ~ 2710685 (-)
AMCG00016074 NA other upstream 452001 4903856 ~ 4929900 (-)
AMCG00016110 ufm1,LOC107701138 other upstream 3229056 7680911 ~ 7753437 (-)
AMCG00016119 NA other upstream 3667366 8119221 ~ 8124033 (-)
G11326 NA other upstream 3739691 8191546 ~ 8194432 (-)
AMCG00016134 NA other upstream 4371690 8823545 ~ 8827760 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_02259491_02262420 NA coding CI01000339 null 2259239 ~ 2262972 (-)