AMCG00016065 (vps36,LOC107701118)


Basic Information

Item Value
gene id AMCG00016065
gene name vps36,LOC107701118
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4518570 ~ 4532263 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016065
GTTTATGTCacgtgattaaaaaaaacacaacagacattttatttcaaacattgaattatttaactacttatttaaaatattattggccggatttgttatattgtttttttttttgtacagccAAGTGTACAGGCAGAAAATTAGGCACCATACaggaagtaaacaaaaataGTCAGTGATGACATTCGAGAGTCCAGTGTGGAGTGTGGTTTGATGTCCATGTCCATTGAAGGCGATAGTAGACAACAATGGACCGATTCGTGTGGTCAAACGGTCTGCTGGAAATGAATGAAACGATGGTGATTCAGCAAAGAGGTGTCAGGCTATATGACGGAGACGAGAAGGCTAAGCTTGATGTGGGGACTGTTCTTCTGAGCACACACCGCCTCATCTGGAGAGACCAaaagaataatGAGTGCTGCATTGCCATTCCGCTGtcacagattgttttctttgagGAGCAAGCAGCAGGGGTTGGCAAGAGTGCTAAGATTGTGATTCACTTGCACCCTGCCTTATCCAATAAAGAGCCTGGGCCATACCAGCAGAGCAAATACTCCTACATAAAATTGTCCTTCAAGGAGCATGGGCAAATTGAGTTTTACAGGCGGCTGTTGGAGGAAATGACACAGAAACGATGGGAGCAGATGCCAGTGTCCCAGCCCATTCACACTGGTACTGCAGGGCTGGCAGGAAGGACCAGGGCAGTTGGAATTGTGGGTATTGAGAGGAAGCTGGAGGAAAAGCGAAAAGAGAtggacaaaaacatttcagagGCTTTTGAAGATCTGAGCAAGCTTATGGAAAAGGCAAAAGAGATGGTGGAATTATCTAGGTCTATAGCCAACAAAATTAAGGACAAACAAGGAGACATCACAGAAGATGAGACTATCCGCTTTAAATCTTATCTTTTGAGCATGGGCATAGCGAACCCAGTCACACGAGAGACGCATGGCTCTGGGACGCATTACCACATGCAGCTAGCCAAGCAACTGGGGGACATGCTTTTGGCCCCACTAAAGGAAAGAGGAGGTATGATGGCTTTGACTGAAGTGTATTGCCTGGTCAATCGGGCTCGGGGGATGGAGTTGCTCTCCCCAGAGGATCTGGTGAATGCCTGTAAAATATTTGAGTCCCTGAAGCTGCCCTTAAGGTTGCGCATTTTTGACAGCGGGGTTATGGTCGTTCAGTTGCAGTCCCACAGCGAAGAAGAAATGATCGCTTCTGCACTCGATAATGTGTCTGACAAAGGCTCTCTAACATCCGAGGAGTTTGCAAAGCTCCTAGGACTCTCAGTCCTTCTGGCAAAAGAGAGGCTGCTTCTTGCTGAGAAAATGGGTCACCTCTGCAGAGATGATTCCGTGGAGGGCTTGCGGTTTTATCCCAACCTCTTTTGATTTGGAGTGGCCAATTTACTGAGGTTTCATGCCATTGTTGTATCTCCAAGCCTCCACTCCAAAGGATTGTGAGGTCCTCTTGGAGTTCACAGTCTGACGAAGACCTGGTTTGAAGGCAGTGTGATTCTTCATTGGTGGTGTGGACTACACCTGTACCAAAACTCTGTACAACGTTTGGCGCTTCAAATTGCTGTATGGTGCAGAAGTCACAAAGCTGAATACTAGTTATGAATTTATACTTATGGGACAGTTATTACTGTGATACTAACCTGTGCTATAATATGTCAGGAATGGGATTGTAGTTTTCAGTTTATCCCTCTTAGGCAGGGGGGCAGGGGCTATATAAAGCTGTTACATGTCAGAAGAATGATAGCTTGAAATTATTATCTTGCTTAGTTGGACAACTTGTGGGTTACatttctgctgttattatgcctcATGCTAGGGGTACTTACAATGTCCCTAATGGTCGCAACTGAATGGTTAAAATTAGATTGTTAATTCTAGCACTTGGATCTTTCAGAGGTCCTGCCTAAAATAAGAAGGCAGTTTTCTTCCTACTTGGCATTAAAGAGCACTCCTTCCCTTGGCATATGGGGCTTGTTTCCTTATTGTCAACTACTTGTTCTCATGAGTCCTGTAAAGATATCTTGTAAAGCTCTTCTTCCAGACTGTACAGACATCTGTATAGATGTCTTCTGTGACGTTGGCCGTCATTCCTCTGTGAAATCCAGGTAGCTttctatatataatacatatgcaTAGTTTTTACAAACTTAATTACAATCTTGTCAACATATCTTGTctcgactgaagtggaagtttATTTTTGGAGCTGTGACAGAGCCTTTATCATTATATTAGTCTCCACTAATAAACCTAAAAGTTGTGACTGAATCCTATTAAAGTTTTTGCTCTACCCATTTGTCAGGGTGTAAGAGACTGTTTTAACTCTGCTAGGTTTATTGTAaatcatacaataaataatCGATACCTAGTTGTTTCCCAATGAGCAGGGCATTATCCTAAATCCCGTGTTCCTTCTGTAGCAGAATTAATAAGGGTTAGAAGGTGCACTAGGATCACTGTCTTGAAGCCATTgatatattttccattcatgAATAACCTTAATTTCTTAAGAGGGCAGAATCAATTGAGACAGTTTAGAGAAGAGTATTTGTATGTTCTGGCATTTTTGTGAATGTTTATGTAGACCTGGAAGCCTTTCAGGTGACATAATTGAAAAGTGTTGTCCCTAACTaaaagaataaaggaaaaaaaaaacagtctgaTGATAAATCCTGTTTTCTGTTATAAAAATGGTTCTGTGTATATTAAAAC

Function

symbol description
vps36 Predicted to enable ubiquitin binding activity. Predicted to be involved in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to act upstream of or within endosome transport via multivesicular body sorting pathway and protein transport. Predicted to be located in endosome. Predicted to be part of ESCRT II complex. Predicted to be active in late endosome membrane. Orthologous to human VPS36 (vacuolar protein sorting 36 homolog).

NR:

description
PREDICTED: vacuolar protein-sorting-associated protein 36 isoform X1

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005768 endosome cellular_component
GO:0043130 ubiquitin binding molecular_function
GO:0032266 phosphatidylinositol-3-phosphate binding molecular_function

KEGG:

id description
K12190 VPS36, EAP45; ESCRT-II complex subunit VPS36

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016065 True 2738 mRNA 0.42 14 4518570 4532263

Neighbor

gene id symbol gene type direction distance location
AMCG00016062 NA coding downstream 1084 4507463 ~ 4517486 (-)
AMCG00016064 LOC105011210,LOC107718790 coding downstream 27905 4476339 ~ 4490665 (-)
AMCG00016063 NA coding downstream 66715 4443416 ~ 4451855 (-)
AMCG00016059 foxo1 coding downstream 90821 4424988 ~ 4427749 (-)
AMCG00016058 NA coding downstream 140410 4376445 ~ 4378160 (-)
AMCG00016073 LOC105011208,LOC102232466,LOC101073007,LOC103140675 coding upstream 44281 4576544 ~ 4582296 (-)
AMCG00016072 LOC102232466,LOC105915781,LOC105011208,LOC106514111,LOC104923823 coding upstream 68678 4600941 ~ 4603273 (-)
AMCG00016071 NA coding upstream 94321 4626584 ~ 4635627 (-)
AMCG00016068 NA coding upstream 111077 4643340 ~ 4664628 (-)
AMCG00016070 NA coding upstream 213006 4745269 ~ 4763349 (-)
G10740 NA non-coding downstream 144849 4371465 ~ 4373721 (-)
G10735 NA non-coding downstream 163274 4354853 ~ 4355296 (-)
G10715 NA non-coding downstream 348232 4166778 ~ 4170338 (-)
G10698 NA non-coding downstream 530615 3987653 ~ 3987955 (-)
G10696 NA non-coding downstream 539453 3977559 ~ 3979117 (-)
G10805 NA non-coding upstream 54460 4586723 ~ 4587875 (-)
G10806 NA non-coding upstream 59557 4591820 ~ 4592077 (-)
G10812 NA non-coding upstream 90468 4622731 ~ 4623216 (-)
G10821 NA non-coding upstream 106187 4638450 ~ 4638659 (-)
G10823 NA non-coding upstream 107526 4639789 ~ 4641030 (-)
AMCG00016049 NA other downstream 598067 3886298 ~ 3920503 (-)
AMCG00016046 NA other downstream 976034 3528842 ~ 3542536 (-)
G10478 NA other downstream 1483387 3034422 ~ 3035183 (-)
AMCG00016029 NA other downstream 1672213 2784125 ~ 2846357 (-)
G10420 LOC101154678 other downstream 1807885 2710399 ~ 2710685 (-)
AMCG00016074 NA other upstream 371593 4903856 ~ 4929900 (-)
AMCG00016110 ufm1,LOC107701138 other upstream 3148648 7680911 ~ 7753437 (-)
AMCG00016119 NA other upstream 3586958 8119221 ~ 8124033 (-)
G11326 NA other upstream 3659283 8191546 ~ 8194432 (-)
AMCG00016134 NA other upstream 4291282 8823545 ~ 8827760 (-)

Expression


Co-expression Network