AMCG00016068


Basic Information

Item Value
gene id AMCG00016068
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4643340 ~ 4664628 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016068
ATGGGCCAGTGCTGCTGCAAGCCCTATGACTGTCACCAGTGTCTGGACAAGACgAGTGAAAGTGCCCTCGTGAAAGAGAGGGAGCTCTCCCTGGAGCTTGCAAACCTCAGGGATGAAGTGGCCTTCAACACAGCACGCTGGGAGCGTCTGCAGAGGGACaaggaggagctggagaggcGCTTCGAGCGGGAGCTGAGGAGGCTGCACGTGCAGCAGGAGGCCGAGCTGACTGCGCTGGAGGACGGACTGAGGGCGCACCACAGGGCTGAGCGGGACAGGCTGCAGGCCCAGCACCAAGCCCTGCTGGAGAACCTCTGCAGCCAGCAGCAAGAGCAGattgaagaaataaatgtgaGCCACGAAGCGACTGTGCTGGAGATGGAGAACAGTCACACTGAAACTATAGCTGAGCTTCAAGACGAGCATGAGAAGAGAGTGAAAGAGTTGAAGATGGCCCACGAACTGGAAAGAAAATCACTGGAGGAAGATTTTGAAAAGCTGAGGCTATCACTGCAGGACCAGGTGGACACTCTGACATTCCAAAACCGCAGCCTGAGGGACCGAGCCAAGCGCTTTGAGGAGGCCCTGCGGAGAAGCACAGACGAGCAGATCGAGGTATCCCTGCCCGCCACTCCCTCACACATACTCATGGACGCACTGGCCCCCTATCAGCACATCGAGGAGGATCTGAAAAGCCTTAAGCATGTTCTGGAGATGAAGAACCTGCAAATCCACGAGCAAGAAAACAAGATCTTGGAGCTGGAAAAACTAGCAGAGAAAAACGTGGTTCTAGAAGAAAGGGTTCAAGTCCTCCAGCAACAAAATGAGGATCTCAAAGCCAGAATAGATCGTAACCTTGCAATGTCGAGGCAACTTTCGGAGGAGAATGCCAACCTGCAGGAGCATGTGGAGAAGGAGAGCAATGAGAAGAAACGTCTCAGCCGCACCAATGAGGAACTGCTGTGGCGGCTCCAGACCGGGGAGCTGCTGAGTCCCAGGATGTCGCCCTCCTCCTCACCCGTCCACCGCTCCTCCCCTGGGCCTGCCTCTCCCTCCAGACTCAACCCCTTCCCCAGATGAGGCCGTCCCTGACGAACCCTGGAGATCCATTCATCACAAACAAGTCTCTGCCCTGGGGGTGACGACAATACAACGCGCATTTTCCCctgaacagattttattttcttccaggtACACACAGGGAGTCCTCCCAACCTCGATATTTACAAACCACCTTGTAACAATTATTCCTGTATGCAAGGACTCAGACCCCTGCAGCATACAACTCCCTCAAAGTCTCACCAGAgcgcaaaaaaataaactttctctTCCACAACCAAAACCGTGGAAACccccttttttccctttttgacTTTGTCTATAAAATCACAGGTATGTCACATGAGGCAGTTTTGGAATAAACACTTTCTACTTTGCTCCCCACGCTCCCCCCTTCTTGACTGAAGGAAACAGAACAAGccaacaaaacaacaagtaGAAAAAGCTTCAATACTTCTCAAGAACAAGCTAAGCAAACATCCAGGATTAGATTTCTAGCACATTGTGCCTCTTATCTCAAGGTGGCCTCTTTTTCTCATCTGCTGTACCGTCAGCTTCGGCCAGGATAACGCACCAAGATTCCAAGAAGCGCCTTGCAGTCTGCCTCTTTGGCACTTATCGAAATTCATACACCAGCAGTTTACCTTGTCTGAACCTCCATCTGCCTTCTCTATCTgcggtttccttttttttttcataactaaataaatacatttaaaaaaaaacgcaaCACAGAATCGGGCGCTAACATTTGTAGTGCTGATTTTGTGTATCTCATACTCCGCAGTTCGCAGGACAAAGCTGCCCATTAAGCAGATGATTTCCTCACGTCCTataatttttatgtttatttttacatttgtatttattcaatttatttctaTAAAAGCATGTACTGTAAGTCTTCCAGTTCTAACTGCAGACTAGTGTAATACTCTTGTACAGATGGAGAAAAAGGAACCTACCACCAACCCCTTTTTGCAGCAGTTGGTGGAGTTCAGTCTCTTCTTCCTTCCTCTTGtatccagttttttttttcctaattgaAAGAAAAGGTAGATGAAAGTGCGATCAATGTAGGTTTACGTAATTATTTGTTCAAGTCCAGGTCAACCTTTTATTACCTCTCATGCATAAGTAGCAtttagggaaaacaaaaatgtaaatctggAATGGTTTAGAAAAAGAATTGTGTGTATGAGCTATTTATATAAAGCCAGTTTTAAAGTGTCTTTGTATGTTCAGGGTTTGTGCAGTGTTAGCTCACTCCACTACTATGTAAGACATTGATCAACGTATTCACAAATATGTCTAGCTTTGCCCTTGAGACCTAGGGAAGGTCTCAAGGGGAAATccagcacacacaaaatattgtcTGAGATACTTTCTTAAACACATAGGTAGAGACTGAGtcattttacagtttaacaTGACCTTAAGACCTTTGATATTAACTGTATAGCACTATACAGAATATTTTTCCAGATGCAGAAAGGGCCCAGACTCCCTGTTCTGGAAAGATCACCCCTGTTTACAAAGAGGGAGATGTCAGCACATCATCCATGTTCTTTGtcgtttgtttttattaaaatatgttgctATCCAGGATAAAACCTCTTGAGATGTAACAAGGGGTTATTGGGTAAGCGGCAGacaacacataaaaacatcCAGAATAATCAAACATCTcatacacaaacagaataatttaCAATCACAATCTTCCTGTAAAAAAGTAACCAAAGCTCATTGTAAAAGGAGTAAAACGTCCACTCAATTTCTAATGATCTGGCAAGCCACTGCAATCATGtagtgctgaaaaaaaaaaaaaaaagccttttaaaCAAGTTCTTTATGTACCCTTGGAACTTTAAGACAGTATCAGACAATCTCAGTGAATaactccatttaaaaatatcttcagATAGTCTAGAGCTTTCAAACATATACGTAACAAACTATTCATACCAGTGCTGTTTGTCTTTCACCTCAGGTGAATATCAGGTTTTTGCCCATAGCTCATCTATGTCAAAATTTGAACAGGCCTAGCAAGGTTAAAGTATAAACCCTTTGTGTTAAATCTTTGTGCCTAATCTACTTATATAAAAAGGCCAggtaatatttttaaacctctATATTAATCTTCCTCTCCCTCCAAATGTATTCCTGAACAGAAGCCTAAATTGGACAATCTCAAGCTAGGTTTTGTCAGCTTTGTCAGATCACAAATAATGTCTGAAATTGAGATGGTTGCTTTACACTTTGCAATTACACAGATATGCTGTTTGATTCAGGTTTAGCTTTGCTCTGAATGGAAATCCAATACAGCACTTATAAGTGTGTTTGATTTACAGACTGCtagtattgtactgtattaataCACTGCTCAAAGGAAAGGTTATGTATAACATAACTTCAGTCTCATATTGTTTCCACATTCCATCCAAGCATGCATTTAAGCAGCAAACTCCCCACTCCATTTGTCCATGAGCATCCCTCCACTACTCCAAATGCAACATTTATTAGCAGCAGCCTCTTGCCTTATAAACCTAGTGTGGGAGTTCCAATGACTTCGTCTGCATGGCTAAATCATTGTTCCTTTAGTGTAATAAATTAGGCCAAATgccaaaacatgtattaaaatatatccatTCACTTTCCTGCCCCTAGGGGTTGTTTGAGATTCTATGTAAGCTGGATCTATTGGTAAGCCAGTCCTGACAAATTGGTGAAAGCAATCATTGTGTGGTTTGGTGAGATAGAATAAAAGTATTTCCTGGGACCTATGAAAGGcatataataatactgtatgAAAAGATGGTAGATGACAGTATATATGTAACACTActgatattataaaatcaaGGTAATATTTCCTTGAGGTAATATTTATCTTGTGAAACTAATGCTAATACTATGTTCTACACTACTATTTTACGCAGTTTgctcattgttattattacaaatctttaaaaaatgacttcTGAAATGACCATTTCACCGATTATATGTGAACTGCTGTAAGTGGAAAGAGTGCAATTCTTGCAGATACAATTTTGACAGTAATGGTCATTGCCACAGCCTTATGGACAAAGAGGAAATCAGATTTTCTGGGCAGAGAAGTAAAGAAAGTAATTACCACACTGTCGCAATGGCTGTTTCTTTTATAATAGTGGTGTGCTGAACTGATAGTTAAAATTTGCATAGAaatcaaacatttacataacCTCTACATAATCTCTTTCATCtgatacctttttttttaagtctgggTACCAtctcaaaaatgtatatttgaataGTCCTGCATCTAGCCTGCTGAATATATCTGCATCTCCCACTGAGTTCATTCAGGATGGGACCCCATTATCATCCTACTAGAGCAGGGGTCTGTGCCCTTTGCATGTTTTAAAGGTCATGCTTGAAACGTTGATTCATAAAGACTTGGAaatatttcattctgatcaattaaataaatcgTTTTGGTTATGTCAATGTCAGTTATTTACAgataatctgaaacaaacttgtttaattgattgttaaCTAAGAAGTATtaagaaattggtgatttagttttttataaaaCTAACTTTATTGTGGTGCTATGGCACCAGGATTGAAGGCCTGTATCAGGGCCTTCTCTCTGCTTATGAGGGAGAAGTGCTACTCACTggtataacaaatatatataacagagAGCATCTACTGATTGTTCTTATAGTGCAGTATCTTGCTGGGCCCACTCACCTGTAGTGTGATGCGATATGGCAGGATGGTTTGGCTGAAGAGAATCTTTGTAACAAGTAACAAGTATCCTCCCTGTTCACTGCACAATGTAACAATTATAAGACCGCTGAAAGAAAAGCCCAAAGTATAAACCCGCCAGCTACCCTTTGTTCAATCTAGGTTGCAGTAGTTTAGAATCTAATATCATGCAACTATTCATTCCTGAAAGAACAACTGTCATTTCTAAGCCTCATTACAACTTTGCAGTGGTTCTATGTGGCTCACTAAAGCTGCCaaaaatatattccttttcACTCCAACACTATGGTTTTTGGACAGCTCTATCTTGGCAGCAACTTTCTTTGACTTGTTTCACCACTTGAGACAAAATCTCATTACTGATGTACTGAAGCAAACCAATAAATATTGCAGCACCTAAAAAGTGCTTGGCATATACCCACAATGCCAACTTACTGTCAGATATTTGGTTCCCACGATTTTGAGCCAACTTTTTGTAACTGTACTGTCCCTGTAGCTATACTGTTCAACCTAACTTACTGCACAGCACATTTCCacatacagaataaaaaatgtggGAACCAACACACAGTGGATTTTGCAGCACCAAAACAATGGAGAGAaggataaaatgtaataaactacAATACAGGTTTAAGAAATATCCAGAGTagaagtttgtttttatgtatgtgtgtatgtcgGTAACCTCAGATCAAGTATTGAAGCCACAGATGAGAAGCAGACTTCAGGTTCTTAAATCTGTCAGTCACTGTGTGAATTCAAAGACAGAGACAATGCATACTATATCCTCTTAAAAAACTAGAAAATGAAGGATCCCTTATTCTTAagtatagtgagggaaaaaagtttgtacgtttgcccactgacaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016068 True 5700 mRNA 0.41 9 4643340 4664628

Neighbor

gene id symbol gene type direction distance location
AMCG00016071 NA coding downstream 7713 4626584 ~ 4635627 (-)
AMCG00016072 LOC102232466,LOC105915781,LOC105011208,LOC106514111,LOC104923823 coding downstream 40067 4600941 ~ 4603273 (-)
AMCG00016073 LOC105011208,LOC102232466,LOC101073007,LOC103140675 coding downstream 61044 4576544 ~ 4582296 (-)
AMCG00016065 vps36,LOC107701118 coding downstream 111077 4518570 ~ 4532263 (-)
AMCG00016062 NA coding downstream 125854 4507463 ~ 4517486 (-)
AMCG00016070 NA coding upstream 80641 4745269 ~ 4763349 (-)
AMCG00016069 LOC103044157,LOC107720662,LOC107556867 coding upstream 196857 4861485 ~ 4887805 (-)
AMCG00016075 NA coding upstream 268196 4932824 ~ 5269754 (-)
AMCG00016086 ltn1 coding upstream 1950077 6614705 ~ 6636697 (-)
AMCG00016081 NA coding upstream 1972704 6637332 ~ 6640537 (-)
G10823 NA non-coding downstream 2310 4639789 ~ 4641030 (-)
G10821 NA non-coding downstream 4681 4638450 ~ 4638659 (-)
G10812 NA non-coding downstream 20124 4622731 ~ 4623216 (-)
G10806 NA non-coding downstream 51263 4591820 ~ 4592077 (-)
G10805 NA non-coding downstream 55465 4586723 ~ 4587875 (-)
G10867 NA non-coding upstream 132199 4796827 ~ 4875011 (-)
G10883 NA non-coding upstream 293451 4958079 ~ 4958278 (-)
G10924 NA non-coding upstream 328568 4993196 ~ 5065889 (-)
G10926 NA non-coding upstream 442289 5106917 ~ 5108966 (-)
G10931 NA non-coding upstream 916804 5581432 ~ 5581688 (-)
AMCG00016049 NA other downstream 722837 3886298 ~ 3920503 (-)
AMCG00016046 NA other downstream 1100804 3528842 ~ 3542536 (-)
G10478 NA other downstream 1608157 3034422 ~ 3035183 (-)
AMCG00016029 NA other downstream 1796983 2784125 ~ 2846357 (-)
G10420 LOC101154678 other downstream 1932655 2710399 ~ 2710685 (-)
AMCG00016074 NA other upstream 239228 4903856 ~ 4929900 (-)
AMCG00016110 ufm1,LOC107701138 other upstream 3016283 7680911 ~ 7753437 (-)
AMCG00016119 NA other upstream 3454593 8119221 ~ 8124033 (-)
G11326 NA other upstream 3526918 8191546 ~ 8194432 (-)
AMCG00016134 NA other upstream 4158917 8823545 ~ 8827760 (-)

Expression


Co-expression Network