AMCG00016071


Basic Information

Item Value
gene id AMCG00016071
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4626584 ~ 4635627 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016071
ATGAAGCGGTTCTATCTAGTGGAGCCTGTGATCGGCCTCTTTGCTTTCGCCAGTTTTATGACATACCCCCTGCTACAGCAGTACATCTACCGGCGGATGTGGGAACAGGTGACCAACTCCACTTACCCCGACTCCCTCAACTCCTCTCACTGCACAGGCAACGACACCGGCCTGACCAAACGCCACGACGATGTACAGAAGAAGACCTCCCTGTTCTTTCTGTACAACGAGTTGTGCTTCATGTTCCCTGGCCTGGCCGTCTCCTTGTTCCTAGTGTCATACAGTGACCAGCGCGGCCGCAAGATAGCCATTATCATCCCTCTCATTGGGGATGTCGTATTCACTTTCACCTACTTCGTGGTGTGCTCCTTCTCTTTGAGCCTGAACTACCTACTCGTTGCTTCCTTCCTGTCAGGGATCCTGGGAGGGCCCACATGCCTCGTAGGGGGTTGTTTCGCGTACGTGGCCGACCTCTGCgacaacagcagcacaaagaCGGTCCGTATGGCCGTGCTGGATATGGTGGTGGGACTGTTGTCAGGCCTTGCGTCTCTGTCCACTGGGTTTTTCATCAGGGCAGCAGGATTTAAATGGCCCTTCCTCACAGCTGCTCTGCTCCATGGCCTTAACATCGTCTACGTGGTCTTCTTCCTGGCAGAGACGGTTCAAAATCCTGCCCCCGCCAGCTTCACCCTGAGAAGCCGCTTCAATGGGGTCTACCTGCTCTTTGCTGCTGCTCCAAGGAAGAGGACCACACTCCTCATCCTCATGCTGCTGGCATTCACTTTCTACAAGTTTGCCAAGGTGGGCGGGATGTTCATGTTTATCCTGTATGAGCTCAACGCCCCCCTGTGTTGGGACGAACTCCTGGTGGGCTACGGCTCAGCCCTCTCCACCCTTATCTTCCTGACAAGTTTTGCAGGGGTGTCCCTGTTGTCCCACTGCCTGCATGATGTCCACATCGTGCTGATCGGCCTGCTCTCTGTGATGGCAGGCCTGGTGATGACCGCCTTCGCCAAGACCACTCTCCTCATGTTTCTTGtgagAGTGCCCTTACTTTTGGCTATCATGCCTGCTCCAGTGCTCCGCTCCATGATGTCCAAGATAGTTTCAAAATCTGAGCAGGGGGCAGTGTTTGCATGTGTTGCCTTCCTGGAGATGCTGAGCACTGTGGTGTCCTTCGCAGCATTCAGCAGCATCTACGCCGCCACTGTGTCCTGGTTCTCTGGTTTCAGCTTCATCCTGGCTTCAGGCTTGACCCTGATCCCCCTAACTCTGATGGGctgtgtgttttgtctggGTCTGGAGGGAACTAATGAAACCCAGTGTCTCACCACTGAAGACGAGGATGTCAATGAAGGCAAAATCAAGCTGCCTGAATGGGACCACAGATGA

Function

GO: NA

KEGG:

id description
K20840 SLC46A3; MFS transporter, PCFT/HCP family, solute carrier family 46, member 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016071 True 1395 mRNA 0.54 5 4626584 4635627

Neighbor

gene id symbol gene type direction distance location
AMCG00016072 LOC102232466,LOC105915781,LOC105011208,LOC106514111,LOC104923823 coding downstream 23311 4600941 ~ 4603273 (-)
AMCG00016073 LOC105011208,LOC102232466,LOC101073007,LOC103140675 coding downstream 44288 4576544 ~ 4582296 (-)
AMCG00016065 vps36,LOC107701118 coding downstream 94321 4518570 ~ 4532263 (-)
AMCG00016062 NA coding downstream 109098 4507463 ~ 4517486 (-)
AMCG00016064 LOC105011210,LOC107718790 coding downstream 135919 4476339 ~ 4490665 (-)
AMCG00016068 NA coding upstream 7713 4643340 ~ 4664628 (-)
AMCG00016070 NA coding upstream 109642 4745269 ~ 4763349 (-)
AMCG00016069 LOC103044157,LOC107720662,LOC107556867 coding upstream 225858 4861485 ~ 4887805 (-)
AMCG00016075 NA coding upstream 297197 4932824 ~ 5269754 (-)
AMCG00016086 ltn1 coding upstream 1979078 6614705 ~ 6636697 (-)
G10812 NA non-coding downstream 3368 4622731 ~ 4623216 (-)
G10806 NA non-coding downstream 34507 4591820 ~ 4592077 (-)
G10805 NA non-coding downstream 38709 4586723 ~ 4587875 (-)
G10740 NA non-coding downstream 252863 4371465 ~ 4373721 (-)
G10735 NA non-coding downstream 271288 4354853 ~ 4355296 (-)
G10821 NA non-coding upstream 2823 4638450 ~ 4638659 (-)
G10823 NA non-coding upstream 4162 4639789 ~ 4641030 (-)
G10867 NA non-coding upstream 161200 4796827 ~ 4875011 (-)
G10883 NA non-coding upstream 322452 4958079 ~ 4958278 (-)
G10924 NA non-coding upstream 357569 4993196 ~ 5065889 (-)
AMCG00016049 NA other downstream 706081 3886298 ~ 3920503 (-)
AMCG00016046 NA other downstream 1084048 3528842 ~ 3542536 (-)
G10478 NA other downstream 1591401 3034422 ~ 3035183 (-)
AMCG00016029 NA other downstream 1780227 2784125 ~ 2846357 (-)
G10420 LOC101154678 other downstream 1915899 2710399 ~ 2710685 (-)
AMCG00016074 NA other upstream 268229 4903856 ~ 4929900 (-)
AMCG00016110 ufm1,LOC107701138 other upstream 3045284 7680911 ~ 7753437 (-)
AMCG00016119 NA other upstream 3483594 8119221 ~ 8124033 (-)
G11326 NA other upstream 3555919 8191546 ~ 8194432 (-)
AMCG00016134 NA other upstream 4187918 8823545 ~ 8827760 (-)

Expression


Co-expression Network