AMCG00016147


Basic Information

Item Value
gene id AMCG00016147
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9478790 ~ 9489618 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016147
GGGGGAAGTTAATAGAGGTGGCACCGCCGGATATAGCAGTTAATAGAGGCAGCACCGCCGGATATGGGACGTCGGTAAAACGAAAAAGAGAAACGGCACATGGGGTATGCTGTAAAACATAATCGGCTTAAAGAAATTAGTGAATTGTCTCATAGAATCTGGTTTTTACGCAGATCTTTACATTAACATATGACGAAGGAATCCAGGCTGCATAAATGGGTAAGTATTGTTTGGATGGATTTCATTCCGGGAAAAACCTTTATGTGGATTTACCACACGCGTGATCTGAGGGTAGTTTCTTGAAGTGTGATACAGATCAAGTGCATATTCATGAAAAGATCAAAACCTGTATACATGTTGTTAAGCAGCATCAGTGTGACCTGTAATCCAGCCCAAATCTTTTTAGAGATGTCATTGTTCTACATTAAACTGTTCTACATGTTTCCCTCAAGTAATGGAGACTGCACTTTGTGCCTGACCGCTGCTGTGTCTTTGCTGGGGTGGTGGTATccataattcatattttctaaTTGTGTTAGGGGTATTCCTTTCTTGGTTGCCTTGAAATGAATTGAGTCTCTTCCAGTGCTTGGCACAGTCAACTGACAATGTAAGTTCTAGACAAACAGTAAGTACAGCAAAGCCTTTAACACCAGTGTGATTCATTGGGTTTTGGCCAAAGGTaaaaattggtttattttatttaatgacgTATTTGTACAGAGAGAGCCTTTCTGCAGACTGTTTAACAACATAACTTTTCAAAGAACGTGTTCATATTAAGAACATGGACACTCAACTGGAAGCATacgtttttaatttttaattttggtataACTTTCACTTTGCACAAACCTACAGTGCAgctgtttttgtaaaatgactgtaataatattttgtttattttgttgtttgtttccacAAAGTTAGTGATGTCTAcagttaaaacacattttaaaatgcttatcatGACAACCCTAACCTCcaaaagaaaagggggggggggatattgGCCAAATCAGCATAAAATGTTCTctcttgatttaatacaattgtatttccttttcctATTGAGTTAAAATAATGAGTGCCTAGGCCTCACACTAATTTGTGAAACATTTCCATAGTCAATCCACTCCTATAACCCAAGTAAGGGAATATACTGAAATActacaaaacatttccatataATGAACTAAGAGTTTTCAATACTGAAAAAGCATAGGTATAGGGAGAGAATGCAGGGGAAGAACAGAAAAGCACTCTGATTGCTAATACATCATGTAGGATTGATTAGCAAAGGAGAATGATATGACCTAATTGAAATATAATAGAGTATCGATTTAACATTGAGTGTCTGGATGTAAAAGTTGTCGTGatctttcttttgtcttttagtGTGTGCGGAGGTGAGCCTGATTCCAGTGATATGGTAATATTTAACAAATGGCTGGAGAATGCAACGTTCAAGAGGAGCAGCAGTAATTTACCAATGAGTGGTGAAGGCACTGGTATAGGGGTATCCACCCCACCAATGGCGGGGTCTTTGGGAAAATCTCAAGAGAGGTTTCCGCTGGACAAGAGCTGTCCAGTGTGCGCTGCCAAAGGTCAGACCCAGGCCCTGCGAGTCTACCGCATCAGCTTTCAGGAGTCTATCATCCTCTGTGGAAACCCACAGtgcaTATTTCCTTTGGGAAGCAAGCCACTTGCTGAAGTTCTCGTACCTGGCACCCCTGGAAAGGTTCTGCCTAAACGCAATTGGGCAAAGAGGAAAAGATTGTGTACCAGCCTTGAAAAAATCCAGGCAGAACTTCCGTCAAAGTGCCAGAGGACAGAAGATCCTGTCAGCAAGGAGGAGGACGTGTCTGCCGGTGGTGAGGTGCAAGAACCTCGTTCTGTGGATTTGAGCCATCAAGAAAGCTCTATGGTTACCTTAGTAACAGAGAGTGAAAACAAAGAGGAAACGACAGCCCCATCACAGCCAGAAGGAGTAGATGTGATTGAGGAATTGGCTCATACCACTGATCTCTGCAGCCTTGGTAAAGACACTGAAAGACCCTGCTCTGTGCAAAGTAACCTTGATGTCAAGTCCGGTGCACTACAGGAAGCAGACTCGGGACAGCTGGTTCCtgctcctctctgtctcttctgGAAGAATCGGCATTCTCTTTGCTGGTTGGATTCACTCATGGTGGCTTTGGTACACTCCAGTGCTTTGAAggagggtgtgaatactttacACACCGAGAACTCGCCAGTTAGAAAGCTATGGACGGAATACCATAAGGCGTGTGCACTTTTAAAGGGGGCACCGCAAACTGACAATCAAGAGGATGCGAATAAAATCCCTTCAGCAGTCTTTCTCCAAGCACAGACACTCCTGGACGACATCcgaatgtttgttttcaaccttCTGCAACCTATGCTGCGCTGCAAACTGGGAGCGAAGGAGAGCCCAGTGTTCGCGCTGCCCCTCTTATTGAAGCAGGACGAGCCGGCAGAGGAGCTGTTCAGACACTCCTTCCATTGGGAGTTTGAGTGCTCCTCCTGTGGGCACACCCTAAAGAACAGGTGTGAGAAGACTTTAACTACGTTCACGGATATTGTGCCAGAATGGCACCCCTTAAACGCTGTTCATCGATCCCAGTGCAATAAGTGCCAACAGAAACTTCAGCAGCGGAGGATGGTTTTGGAAAGgttACACCCCATTTTCATGCTGCATTTCGTTGAAGGGCTCCCACAGAACGATTTAAATGCTTATGCATTTGACTTCCAAGGGAAACACTACGCGGTTTGCACTGTGATCCAGTACGATGAAAGCCTGAAGCATTTCGCAACGTGGCTCCGTCAAGACGATGGGTCATGGCTGGAATGCGATGATTTAAAATATCCCCATTGCGCCGTTCACAAGCAGCTGGAAGTTCCTGCCCATGAAATCCACATTGTCTTCTGGGAAGCTCAGGAAAAGAGCACTGAGCCGGAGACTGACCTCTGTCTGAGAGAAGACTGCGTTGAGAGAGATGGATGCACTAAAACGGACCAGCAAAAAATCTCCCTGCTGGTTCCCGAGACGGATCTCTTCAATGTGACTTCAGATGTGAAGAGTGCTGATCTTTCAGCTGATTGCAGCTTTAATAATTCAATAGGAAGTGATGAGTTGTTGGACACCTTTGAGGGTCTGTCACACAATGATATCGTCACCCTGACCCTTGTTGAGATCAAGGTTGAAACAGAGGGGCAGGCGCTGGACAGATGCCAAATTCCTGACTCTTTGGAAGGCAGTGACCAAATTGAGCCACCTGAAGAAATCCTGCCCGCTCAGCCTTCTAGTGAAAACTGTCTTCTGGGAGCTAGTGGGAATGGATCTCTTTCTCCAGACATGAACCATGGAATTGAAATGCCTTCCGGTCTCGGCCGTCCTGAAGAACCTGCAAAAGTGTGTGTATCACAGCCAGGGATGTCAAAAGGGAGCGAAGCTGTTTTGCCTGGTCCCCTGAAGACTGGGAAGGAAAAAAGAGGTTCAGTTGACTATAAGAGAAGAGTCATGGCAGCCGTCAAGAGCCCTCCGCCACTGATGGTTAACAGTGCACTTTCTCCAGACACCACTTTACCTCCTTCACCGTCTTTGGCACTCAGTGGCAACATCACAGTTGCTGTTTCGTCCACTCAGAGTGCTTCTGTTCTGTCCTCGGCTGTGAGTGGAATCAAAACCAGGGCCTCTGGAGGCAGATGGGCAGCTAATTTGCTGAACAGGCACCCATCCTTACAAGCAAGCGCAGCCCACCTCAGGCATGCCTCCGGGGCGCCTTCTAGTCACTCTCCAGGGACCCTGAACAAGGAAAAGCAGGGTACCAAAACCCCCTTGGCACTTGCGGATGATGCGTCTTTCTTGGGCAAGGCAGCAGAAATGTTTGGGGGATTTATGTCAAAAGGCCGTGCAAGCACAGTTGTGGCATCTTCAAAGGGTAATTTAATCTCTCAAGGTATGGAATCAAAAACTCAAGATGTCTTCAAGGAGGAATGTGTAAAATCTCCTTCCCTGCAAGCTACGTTTTTATCCAAACCCGTTAATACAATAGGTGCCTTACACCCTACTTTAGGCGCTGCTACTCTGGGCCACGACACACCGCAAGAACCAAGCAAGACTTCAGCACTTAAAGGTTTGGATAAATCTGAGAAACTCCGTCATAAACTCTTGAAAAAGCTCAAGGCTAAAAAGGAGAAGCTTGCATCCCTCAACAACTTACTGAAATTAGAAGGGGGTGGGAAAGGAGATGTCTTCAGACTTCCGGAAAGCAGAGAATCCTCCAAATATTTAGACGTCAAGAATGTCTTGCCAACCCCGGACAGCACAGATACCGAGTCGCCCTACACCGTTAGCTCCAGCACTTCGTTTTGTAGCAGTCCCAGTTACGATGAATTCTTCGCTGACCTCTTATCTCCTGCTACAACCACGAGCTCGGCGTCCCCAGACAGCACCGGTTTGCTGGAGATGCTGGTAAACGGACAGGAGACAGGAGGACTTCCCAATGGAGCTGCCGTGGACCACAGTGGCTCTCAGGGCGGCACTGCTGTACAGCCTCAGGTTATCGGCTCGGTGACGATACAAGAAAACGGCTTGATTTCGGCAAAGGAAGATTTCTTCAGTGAGTTAATGTCTAGCTCAACACTTGCAGAGAGCACAGATTTTAACATGCTTGACCTTTCCACCTTTTCTTTTGattagttgttttttccattgttgTGGAGTTAAAAAATGGCACTGTACAGAGTTTGCTTATTGAAAGTAATCATTACTTGAATGCTAAATtggctagtgtgtgtgtgtgtatgacttttttgtaataaaactgttaaaaacagtATATTTCTAGCTGATCAACTGCTAGTGTTTAGTAGTTGCTGtgttttacataatataaactGCTTTAGAATTCCTGTTccttttttgcacatttttgaaACATAATGAAATTATTAACTTTTCAAATTACATGATCAATCACTCAAGTAACACTCGGCTCTCCAGATAATAAAGATAACTTAGGTTTCATATAATTCCCTCCTTCATTTAATCAATATGAATGATTGATGTATAAATGAGGAGCACCAAACCAACATCAAacttttgcagaaaatgactGCTCCGTATATGGATTTAAATAAGATACAGGGAAGGTGTGACTGCTTTTTGACCTGTTCAGAACAAACCAGTACATGTCGAGGGATAGAGAAAGTTAGTGAAAATATGCATTAAGAATGACTGAAGGTTTGCCACAATTTTTGTAGGGCAGGTGTGTCAGACATATACTGTAATCTCACAAATTATTCATAAGAAAATAGTGATTTTGGATGTCTGGTCCAGTTTTGTATTTCAACTCAAGGAAAGTTAACTACTTAAATGATACAGACATCTAAAGGTTAATTATATAGTTCAGAAAATGGCTAAAACAAGTCTCTTCTGGTGATAAGCAGGGGGTACTGTGCAGTCTgctttattcaaattaattctcCCTTATAACTGTAATTCATATGGAGCCATTTTTTTCAACCAGCCTCTACTAACATCCACTACCAGGCCTTCAGCTCTCTCCAGTTGTAGCAGGgggttcaattaatcaattacttcAAAAAGAGTGATTGCATGCCTCTGTAATGAGGTTCGTTTagttaaactgtttattttaaaaccttgttTTAAAGGTATGTTTTGCAGGAAATAGCTGCTGAAACCATATGTTCAACAAAGTTTAcctttttgtaatatgtaaataaaacattaattgaaa

Function

GO: NA

KEGG:

id description
K23008 USPL1; SUMO-specific isopeptidase USPL1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016147 True 5789 mRNA 0.43 8 9478790 9489618

Neighbor

gene id symbol gene type direction distance location
AMCG00016150 NA coding downstream 3272 9468346 ~ 9475518 (-)
AMCG00016146 NA coding downstream 14399 9461493 ~ 9464391 (-)
AMCG00016153 NA coding downstream 22245 9452820 ~ 9456545 (-)
AMCG00016149 NA coding downstream 37051 9432630 ~ 9441739 (-)
AMCG00016154 NA coding downstream 51546 9420129 ~ 9427244 (-)
AMCG00016162 NA coding upstream 186320 9675938 ~ 9683998 (-)
AMCG00016161 NA coding upstream 194548 9684166 ~ 9685154 (-)
AMCG00016166 NA coding upstream 217653 9707271 ~ 9711998 (-)
AMCG00016164 NA coding upstream 222515 9712133 ~ 9713118 (-)
AMCG00016165 NA coding upstream 277597 9767215 ~ 9767922 (-)
G11571 NA non-coding downstream 164343 9314000 ~ 9314447 (-)
G11482 NA non-coding downstream 419690 9055904 ~ 9059100 (-)
G11346 NA non-coding downstream 1146987 8326182 ~ 8331803 (-)
G11345 NA non-coding downstream 1157748 8320697 ~ 8321042 (-)
G11314 NA non-coding downstream 1304816 8173689 ~ 8173974 (-)
G11650 NA non-coding upstream 53890 9543508 ~ 9543743 (-)
G11658 NA non-coding upstream 100117 9589735 ~ 9594953 (-)
G11662 NA non-coding upstream 206155 9695773 ~ 9696054 (-)
G11675 NA non-coding upstream 478959 9968577 ~ 9968783 (-)
G11677 NA non-coding upstream 500989 9990607 ~ 9991140 (-)
AMCG00016134 NA other downstream 651030 8823545 ~ 8827760 (-)
G11326 NA other downstream 1284358 8191546 ~ 8194432 (-)
AMCG00016119 NA other downstream 1354757 8119221 ~ 8124033 (-)
AMCG00016110 ufm1,LOC107701138 other downstream 1725353 7680911 ~ 7753437 (-)
AMCG00016074 NA other downstream 4548890 4903856 ~ 4929900 (-)
AMCG00016176 NA other upstream 1344794 10834412 ~ 10847811 (-)
AMCG00016194 NA other upstream 2276534 11766152 ~ 11781547 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other upstream 2342810 11832428 ~ 11947322 (-)
AMCG00016211 NA other upstream 2833543 12323161 ~ 12329033 (-)
AMCG00016226 NA other upstream 3360260 12849878 ~ 12870560 (-)

Expression


Co-expression Network