AMCG00016149


Basic Information

Item Value
gene id AMCG00016149
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9432630 ~ 9441739 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016149
GACCAGTTTTGCACTTACATGCAGCTGGAGTACACCGAGAAAGAGGAGTCTCTCTCTCGAAAGAAATGGGCGTCGTTTGCTCTGCCGGCCACCGTGAAAGAAGTCTGTCATGGTGAGCCCATATTGAGGCTCCGCTGTACCCCCGATGGCACTGTTGTCACAGTCAGGGAGGACGGGGCCATCTACTTCTGGTCTCCGGAGCTGAAATTGAAGAAAAGCAAGACTGTGTTTGAGAGGCCagtaaatagaaaaaacaaatgggtgACTGATTTCATCACAATGCCAGAGTACAACAAGCTGATCCTAGGAACTGGGGACAGGGAGATCCAGATGTATGAACTCTCTTCTTTGGAGCCCTATTGTCAGATCAGTGCACTGCAGACTGTGCCTCTCAGATTAGACTACTGCTCCACTGGCCCTGATGAGTGTATGATTCTGTATGGGGATGCTCAGGGATGCGTGAACATCATATTAATGACATCCGTCGGAGAGACATTGAGAATGTGGAAGAAGCTGCCAAAAGTTGAAAATGTGCCCAATATAGGAATCGACAATGCTGTTCTCTCTCCAAATTTTACATACATTCGCTGGAAGGTACATGAAGACTGGGTGACGCAGGTAAAATATTATGACAACATCCGGGCTGTGATCTCCACATCAAACCAGGAGTCCTCCGCTCTAGTCATAGGCTGCACTGTTCCCACAACTAACATTGAGCAGCAGATGAAAGAGCTAAAGGAAGCTGGTCGAGAAGGGAAGGGGAAGAAGGTTCAGGCCTGTGCAGGGCTGCCTCTGCAGCGAGCTGACTGCGATCAGACCGTCTTCCCCATCTATAAAGGCGTGAAGACTTTTGATTTCTGTAAGAAGCACAACTTAATCGtcactggagggatggacagacTCATCAGGATGTGGAATCCTTATGTGACGGGGAAACCTACTGGCATCCTGAAAGGTCACTGCGCACCTGTCTTTTACCTGTATATCTCCTCAGATGACAACAGGATATTTTCTGTCTCCAATGATAATACTGCTAAGATCTGGGACATTCAAGACCAGTGCTGCCTGTTCACAGCAAACCCCAAAGCCAGTCAAAATGCAGATGTTTCTGCATGTCTTTACTCCCCCGTGGTGAAAACACTCTACATTGCTACGGACTCCATTGCTCTTCTCACCTTGAGGACAAAGCCACAACCCCAGGGTAACCTCACTGTGTCTCATAAAGAGCCAGTCCTGTGCTGTGGCTACAGTAAGGAGTTCCGGCAAGTGGTCAGCTGTACGGAAGGATCTgttgtCAAAGTCTGGGATATCGATACTGGAAACCAAGTCTTCGAGTTTGGTGGTGCCCATGGGTCCTCTGCGATTACGTgcctgacctttgaccttaGTGGCAGAAGGCTTGTCACTGGTGGAAGAGATGGGTGTTTGAAGATCTGGAATTTCAACAATGGCCACTGCTTACGGATTTTAAGGAAGGaacataagaaagatgaAGTCTGTGACTGCACTTATGTTAAAGTCAACAGAAAC

Function

GO: NA

KEGG:

id description
ko03440 Homologous recombination

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016149 True 1530 mRNA 0.48 14 9432630 9441739

Neighbor

gene id symbol gene type direction distance location
AMCG00016154 NA coding downstream 5386 9420129 ~ 9427244 (-)
AMCG00016155 NA coding downstream 15905 9416522 ~ 9416725 (-)
AMCG00016152 NA coding downstream 22063 9406302 ~ 9410567 (-)
AMCG00016151 NA coding downstream 73900 9333693 ~ 9358730 (-)
AMCG00016148 rxfp2,LOC106591039 coding downstream 143306 9267201 ~ 9289324 (-)
AMCG00016153 NA coding upstream 11081 9452820 ~ 9456545 (-)
AMCG00016146 NA coding upstream 19754 9461493 ~ 9464391 (-)
AMCG00016150 NA coding upstream 26607 9468346 ~ 9475518 (-)
AMCG00016147 NA coding upstream 37051 9478790 ~ 9489618 (-)
AMCG00016162 NA coding upstream 234199 9675938 ~ 9683998 (-)
G11571 NA non-coding downstream 118183 9314000 ~ 9314447 (-)
G11482 NA non-coding downstream 373530 9055904 ~ 9059100 (-)
G11346 NA non-coding downstream 1100827 8326182 ~ 8331803 (-)
G11345 NA non-coding downstream 1111588 8320697 ~ 8321042 (-)
G11314 NA non-coding downstream 1258656 8173689 ~ 8173974 (-)
G11650 NA non-coding upstream 101769 9543508 ~ 9543743 (-)
G11658 NA non-coding upstream 147996 9589735 ~ 9594953 (-)
G11662 NA non-coding upstream 254034 9695773 ~ 9696054 (-)
G11675 NA non-coding upstream 526838 9968577 ~ 9968783 (-)
G11677 NA non-coding upstream 548868 9990607 ~ 9991140 (-)
AMCG00016134 NA other downstream 604870 8823545 ~ 8827760 (-)
G11326 NA other downstream 1238198 8191546 ~ 8194432 (-)
AMCG00016119 NA other downstream 1308597 8119221 ~ 8124033 (-)
AMCG00016110 ufm1,LOC107701138 other downstream 1679193 7680911 ~ 7753437 (-)
AMCG00016074 NA other downstream 4502730 4903856 ~ 4929900 (-)
AMCG00016176 NA other upstream 1392673 10834412 ~ 10847811 (-)
AMCG00016194 NA other upstream 2324413 11766152 ~ 11781547 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other upstream 2390689 11832428 ~ 11947322 (-)
AMCG00016211 NA other upstream 2881422 12323161 ~ 12329033 (-)
AMCG00016226 NA other upstream 3408139 12849878 ~ 12870560 (-)

Expression


Co-expression Network